View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0977-Insertion-13 (Length: 925)
Name: NF0977-Insertion-13
Description: NF0977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0977-Insertion-13 |
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| [»] chr8 (6 HSPs) |
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| [»] scaffold0438 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 414 - 925
Target Start/End: Complemental strand, 24291350 - 24290852
Alignment:
| Q |
414 |
ttctataaactgcttttcagactggtgcgcttgttcgcttgcttccattgattggatcttcaagtataaggtattttaaggtatctaggttcgttattgt |
513 |
Q |
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| T |
24291350 |
ttctataaactgattttcagactgatgctcttgttcgcttgcttccattgattggatcttcaagtatcaggtattttaaggtatctaggttccttattgt |
24291251 |
T |
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| Q |
514 |
taattgtggttttgttagaagctatacttcgactaccaaacttgcagatagttgcagaaaaatgttgcttatgtgactgattgctattgcagttgcagag |
613 |
Q |
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| T |
24291250 |
taattgtggctttattagcagctatacttcgactaccaaacttgcagatagttgcagtgaaatgttgcttatgtgactgactgccattgcagttgcagag |
24291151 |
T |
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| Q |
614 |
gcatttaaaaatataatttttgtgattaacaaatgttgtgaattgaatttaatatcatatcatatttctcctatcaatggagaaagaagagttgtcaaaa |
713 |
Q |
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| T |
24291150 |
gcatttaaaaatataatttttgtgat-------cgttgtgaattgaactta-----aaatcataattctcctatcaatagagaaagaagaattgtcaaaa |
24291063 |
T |
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| Q |
714 |
aattctcatttaggttcgatatcccggattctcaagcaagtgactgatcgtgtttattttctttgtagcactgcttgtttggtgggcattacaggcgttt |
813 |
Q |
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| T |
24291062 |
cgttttcatttaggttctgtatcacagattctcaagcaaacgaccgattgtgtttattttcattgtagcactgcttgtttggtgggcatcacaggcgttt |
24290963 |
T |
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| Q |
814 |
ttgctccacttcttgaggagacagtttt-cgaggcttttttatgatgtccctatctaaatggtattgattgtctctatgtcttttccttttacatttagt |
912 |
Q |
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| T |
24290962 |
ttgctccacttcttgaggagacagttttccgaggcttttttatgacgtccctaactaaatggtattgattgtctc--tgtcttttccttttacatttagt |
24290865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 95 - 242
Target Start/End: Complemental strand, 24291684 - 24291535
Alignment:
| Q |
95 |
gtgggtgtgaggaggtgtattgagagtttggttagtgatatt--acttcaataatggtttcaagtagtgggtacccttcaccttacaagtcagtttttgt |
192 |
Q |
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||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24291684 |
gtgggtgtgaggaggtgtattgagagtttagatagtgatattttacttcaataatggttctaagtagtgggtacccttcaccttacaagtcagtttttgt |
24291585 |
T |
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| Q |
193 |
gaggtcgagttaggctagatattgcatagtgatatagcctttatagttct |
242 |
Q |
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| T |
24291584 |
gaggttgagttaggctagatattgcatagagatacagcctttttagttct |
24291535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 304 - 410
Target Start/End: Complemental strand, 24291534 - 24291428
Alignment:
| Q |
304 |
tataagaacttcaaaatgtatgaaccatgttgccaacctcctattgtgttatgaatcatctatgctaagtagcttcaccacgtgatgagtatgaatcagt |
403 |
Q |
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| T |
24291534 |
tataagaacttcaaaatgtatgaaccatgttgtcaacctcctatcgtgttatgaatcatctatgctaagtagcttcatcacgtgatgagtatgaatcagt |
24291435 |
T |
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| Q |
404 |
tatcctt |
410 |
Q |
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| T |
24291434 |
tatcctt |
24291428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 26296211 - 26296266
Alignment:
| Q |
8 |
cagaacctatctgctctcccctcttctttttcatctctaacatttcttatctttat |
63 |
Q |
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| T |
26296211 |
cagaacctatctgctctcccctcttctttttcatctctaacatttcttatctttat |
26296266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 26309468 - 26309523
Alignment:
| Q |
8 |
cagaacctatctgctctcccctcttctttttcatctctaacatttcttatctttat |
63 |
Q |
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| T |
26309468 |
cagaacctatctgctctcccctcttctttttcatctctaacatttcttatctttat |
26309523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 26343528 - 26343583
Alignment:
| Q |
8 |
cagaacctatctgctctcccctcttctttttcatctctaacatttcttatctttat |
63 |
Q |
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| T |
26343528 |
cagaacctatctgctctcccctcttctttttcatctctaacatttcttatctttat |
26343583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0438 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold0438
Description:
Target: scaffold0438; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 13689 - 13744
Alignment:
| Q |
8 |
cagaacctatctgctctcccctcttctttttcatctctaacatttcttatctttat |
63 |
Q |
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| T |
13689 |
cagaacctatctgctctcccctcttctttttcatctctaacatttcttatctttat |
13744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 16796570 - 16796516
Alignment:
| Q |
11 |
aacctatctgctctcccctcttctttttcatctctaacatttcttatctttatgt |
65 |
Q |
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| T |
16796570 |
aacctatctgctctccacttttctttttcatctctaacatttcatatctctatgt |
16796516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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