View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0977-Insertion-14 (Length: 313)
Name: NF0977-Insertion-14
Description: NF0977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0977-Insertion-14 |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 92 - 267
Target Start/End: Complemental strand, 45188913 - 45188738
Alignment:
| Q |
92 |
attgttcaaaaaattaattttagttcaaaaaatgtattttttacctaggttctttttacattcgcaccacattacataatgcattctttttacataaata |
191 |
Q |
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| T |
45188913 |
attgttcaaaaaattaattttagttcaaaaaatgtattttttacctaggttctttttacattcgcaccacattacataatgccttctttttatataagta |
45188814 |
T |
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| Q |
192 |
atcatatttaaagcattgtcaaacattaaatatgaacatctctttcaatcgagatatatcccttcctctttatcca |
267 |
Q |
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| T |
45188813 |
atcatatttgaagcattgtcaaacattaaatatgaacatctctttcaatcgagatatacttcttcctctttatcca |
45188738 |
T |
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Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 45189104 - 45189033
Alignment:
| Q |
8 |
aacagaacataatttcacacgtgttgtagtttttctaaatttggcacggtttagaaataggtcgacaaaccc |
79 |
Q |
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| T |
45189104 |
aacagaacataatttcacacgtgttgtagtttttctaaatttggcacggtttagaaataggttaacaaaccc |
45189033 |
T |
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