View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0977-Insertion-15 (Length: 916)
Name: NF0977-Insertion-15
Description: NF0977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0977-Insertion-15 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 498 - 916
Target Start/End: Original strand, 35723512 - 35723931
Alignment:
| Q |
498 |
atgcagccttgaagatccaacctttcaagatttggaattccagtgaaatctggagtttgatgtagatatttggaaattctcatattggtcttcaaatacc |
597 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35723512 |
atgcagccttgaagatccaacctttcaagatttggaattccagtgaaatctgaagtttgatgtagatatttggaaattctcatattggtcttcaaatacc |
35723611 |
T |
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| Q |
598 |
cgcaaaagcaaatttcctaagattctgtccttaaaagtgcacacatgttgtttatccttgaatcaattccaaccagtttacagtcatagtgagacaaatt |
697 |
Q |
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| T |
35723612 |
cgcaaaagcaaatttcctaagattctgtccttaaaagtgcacacatgttgtttatccttgaatcaattccaaccagtttacagtcatagtgagacaaatt |
35723711 |
T |
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| Q |
698 |
tgggttgtaaccttttccatacctttgcgaaaaatcctccaacaggytctgtttcaagcctataacgaaaattttaaatgattaaactaatatttaacat |
797 |
Q |
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| T |
35723712 |
tgggttgtaaccttttccattcctttgcgaaaaatcctccaacaggttctgtttcaagcctataacgaaaattttaaatgattaaactaatatttaacat |
35723811 |
T |
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| Q |
798 |
gaataatcatcatcgaacaaaacgatcatgagtgaagacctatttggaatatggctttcattctatatctgtatgtatagcatcttacttttggc-atac |
896 |
Q |
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| T |
35723812 |
gaataatcatcatcgaacaaaacgatcatgagtgaagacctattttgaatatggctttcattctatatctgtatgtatagcatcttacttttggcaatac |
35723911 |
T |
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| Q |
897 |
ttttattatactacttgatt |
916 |
Q |
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| T |
35723912 |
ttttattatactacttgatt |
35723931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 143 - 447
Target Start/End: Original strand, 35723215 - 35723509
Alignment:
| Q |
143 |
aaaattcaaatttcagtaaaaacaaggaattgcacaaataccaaacaaaatctagaccctctactttcattagattgtgtgcttcggtattcaaaagtct |
242 |
Q |
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| T |
35723215 |
aaaattcaaatttcagtaaaaacaaggaattgcacaaataccaaacaaaatctagaccctctactttcattagattgtgtgcttcggtattcaaaagcct |
35723314 |
T |
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| Q |
243 |
cttactgtgaaccactgtggtcctctcccaagagtgccctaacatgcaaggaagttgaacatgcaggataagcatggaaggaatagacctcatgctactc |
342 |
Q |
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| T |
35723315 |
cttactgtgaaccactgtggtcctctcccaagcgtgccctaacatgcaaggaagttgaacatgcaggataagcatggaaggaatagacctcatgct---- |
35723410 |
T |
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| Q |
343 |
agctctaagtcttgataatatatctacacaagcatcacctctctgagagaatgaaccaaataaagggaccaaatttaagattttgcaatcttc-ttttaa |
441 |
Q |
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| T |
35723411 |
-------agtcttgataatagatctacacaagcatcacctctctgagagaatgaaccaattaaagggaccaaatttaagattttgcaatcttctttttaa |
35723503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 7 - 118
Target Start/End: Original strand, 35723109 - 35723219
Alignment:
| Q |
7 |
aagggtaacttcttagtatattatttttgtcacccgttacaattcaacccaatttgatcctttgcagttaagcgtagaggatactcacacacaacaaaaa |
106 |
Q |
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| T |
35723109 |
aagggtaacttcttagtatattatttttgtcacccgttacaattcaacccaatttgat-ctttgcagttaagcgtagaggacactcacacacaacaaaaa |
35723207 |
T |
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| Q |
107 |
taatataaaaat |
118 |
Q |
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| T |
35723208 |
taatataaaaat |
35723219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 477 - 571
Target Start/End: Complemental strand, 35687331 - 35687237
Alignment:
| Q |
477 |
gcatgaacctcaaccaggtttatgcagccttgaagatccaacctttcaagatttggaattccagtgaaatctggagtttgatgtagatatttgga |
571 |
Q |
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| T |
35687331 |
gcatgaacctcaactaggtttatgcagccttcaagatccaacttttcaagatttggaattccagtgaaatctggagtttgatgtagatatttgga |
35687237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 602 - 871
Target Start/End: Complemental strand, 35685548 - 35685278
Alignment:
| Q |
602 |
aaagcaaatttcctaagattctgtccttaaaagtgcacacatgttgtttatccttgaatcaattccaaccagtttacagtcatagtgagacaaatttggg |
701 |
Q |
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||||| |||||||| ||| |||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| | ||||| || || |||||| || |
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| T |
35685548 |
aaagcgaatttcctcagaatctgtccttaaaagtgaacacatgttatttatccgtgaatcaattccaaccagttcatcatcataatgtga-aaatttagg |
35685450 |
T |
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| Q |
702 |
ttgtaaccttttccatacctttgcgaaaaatcctccaacaggytctgtttcaagcctata---acgaaaattttaaatgattaaactaatatttaacatg |
798 |
Q |
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||||||| |||||||||| | ||| | || | || ||| | ||||||||| ||||||| | |||||||| |||||| | ||||||||||||||||| |
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| T |
35685449 |
ttgtaactttttccatacatctgcaacaatttcttcaatgagttctgtttcacgcctataaagaagaaaatttgaaatgagttaactaatatttaacatg |
35685350 |
T |
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| Q |
799 |
aataatcatcatcgaacaaaacgatcatgagtgaagacctatttggaatatggctttcattctatatctgtat |
871 |
Q |
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| T |
35685349 |
aatgataattaaggaacaaaatgttcatgagtgaggacttattttgattatgg-tttcattctatatctgtat |
35685278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 308 - 414
Target Start/End: Complemental strand, 35689790 - 35689683
Alignment:
| Q |
308 |
ggataagcatggaaggaatagacctcatgctactcagctctaagtcttgataatatatctacacaagcatca-cctctctgagagaatgaaccaaataaa |
406 |
Q |
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||||||||||||||| ||||||||||||| | |||||||| || ||| ||||| |||||| ||||||||| | | || ||||||||||| |||||| || |
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| T |
35689790 |
ggataagcatggaagcaatagacctcatgttgctcagctccaattctcgataaaatatctgcacaagcattatcttccttgagagaatgatccaaattaa |
35689691 |
T |
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| Q |
407 |
gggaccaa |
414 |
Q |
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|||||||| |
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| T |
35689690 |
gggaccaa |
35689683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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