View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0977-Insertion-16 (Length: 413)
Name: NF0977-Insertion-16
Description: NF0977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0977-Insertion-16 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 413
Target Start/End: Original strand, 24399099 - 24399488
Alignment:
| Q |
8 |
cagaaactgttcatgagcctttgggtctcgtcctcattatttcatcttggaatttgccctttggtgagttagttatatactacaatacttcttgctttga |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24399099 |
cagaaattgttcatgagcctttgggtctcgtcctcattatttcatcttggaatttgccctttggtgagttagttatatactacaatacttcttgctttga |
24399198 |
T |
|
| Q |
108 |
accaaaatcacagtcattcaattactagataaagttgaaacaacgacaaaaatttagagacggaaaattggaaatctgattctaattccgtagttaagtg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
24399199 |
accaaaatcacagtcattcaattactagataaagttgaaacaacgacaaaaatttagagacggaaaattggaaatctgattctaatttcgtagttaagtg |
24399298 |
T |
|
| Q |
208 |
ttagagatgcaaaatttaccgaccaactttaannnnnnnngcgtataannnnnnncgttattttgttagagtcttcatagatttgggctcgtaatataat |
307 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
24399299 |
ttagagatgcgaaatttaccgaccaacttta----------------atttttttcgttattttgttagagtcttcatagatttgagctcgtaacataat |
24399382 |
T |
|
| Q |
308 |
attttgtaacctatnnnnnnncacaggagtgtctttggagccactgataggagctatagctgctggaaatgcagcagtgttaaaaccttcagagttgtct |
407 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24399383 |
attttgtaacctataaaaaaacacaggagtgtctttggagccactgataggagctatagctgctggaaatgcagcagtgttaaaaccttcagagttgtct |
24399482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 404
Target Start/End: Original strand, 41843117 - 41843191
Alignment:
| Q |
330 |
acaggagtgtctttggagccactgataggagctatagctgctggaaatgcagcagtgttaaaaccttcagagttg |
404 |
Q |
| |
|
|||||| |||| ||||||||| | || ||||| |||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
41843117 |
acaggactgtccttggagccattaattggagccatagctgctggaaatgttgcagtcctaaaaccttcagagttg |
41843191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 41842951 - 41843019
Alignment:
| Q |
8 |
cagaaactgttcatgagcctttgggtctcgtcctcattatttcatcttggaatttgccctttggtgagt |
76 |
Q |
| |
|
|||||| |||| ||||||| | ||||| |||||||| || ||||| |||||||| ||||||||||||| |
|
|
| T |
41842951 |
cagaaattgttgctgagcctcttggtctagtcctcataatctcatcatggaattttccctttggtgagt |
41843019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University