View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0977-Insertion-17 (Length: 188)

Name: NF0977-Insertion-17
Description: NF0977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0977-Insertion-17
NF0977-Insertion-17
[»] chr7 (3 HSPs)
chr7 (91-188)||(31795569-31795666)
chr7 (7-101)||(31795697-31795791)
chr7 (94-153)||(22189810-22189869)
[»] chr3 (1 HSPs)
chr3 (7-95)||(1604845-1604934)
[»] chr8 (1 HSPs)
chr8 (94-182)||(10149858-10149946)
[»] chr4 (1 HSPs)
chr4 (9-96)||(4529185-4529275)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 2e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 31795666 - 31795569
Alignment:
Q  91 atacaaagtgtgttgtgagattatatcggtggttgaagagcttcttgtcaacatgcaagttgcgccaaaagtttttcgcctaattttcgacatacgaa 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  31795666 atacaaagtgtgttgtgagattatatcggtggttgaagagcttcttgtcaacatgcaagttgcaccaaaagtttttcgtctgattttcgacatacgaa 31795569  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 7 - 101
Target Start/End: Complemental strand, 31795791 - 31795697
Alignment:
Q  7 agtttgggctggagaaaatggatggaagaatcaattttggcttttgtattttcaattcaaggatgtgttgatacaatcaagattatacaaagtgt 101  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||    
T  31795791 agtttgggttggagaaaatggatggaagaatcaattttggcttttgtattttcaactcaaggatgtgttgatacaatcaagattacacaaggtgt 31795697  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 22189869 - 22189810
Alignment:
Q  94 caaagtgtgttgtgagattatatcggtggttgaagagcttcttgtcaacatgcaagttgc 153  Q
    ||||||||||| ||| ||||| | | ||||||||||||||| |||||||||| |||||||    
T  22189869 caaagtgtgttatgatattatgttgatggttgaagagcttcctgtcaacatggaagttgc 22189810  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 1604934 - 1604845
Alignment:
Q  7 agtttgggctggagaaaatggatggaagaatcaattttggcttttgtat-tttcaattcaaggatgtgttgatacaatcaagattataca 95  Q
    ||||||||||  ||||||| || |||||||| ||||||| ||| || |  |||||| ||||||| | ||| |||||||||||||||||||    
T  1604934 agtttgggctatagaaaattgaaggaagaatgaattttgacttgtggaaatttcaagtcaaggacgggttaatacaatcaagattataca 1604845  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 182
Target Start/End: Original strand, 10149858 - 10149946
Alignment:
Q  94 caaagtgtgttgtgagattatatcggtggttgaagagcttcttgtcaacatgcaagttgcgccaaaagtttttcgcctaattttcgaca 182  Q
    |||| |||||| ||||||||| |||||||||||||| ||||  | | ||||  ||||||  ||| ||||||||| ||| ||||||||||    
T  10149858 caaattgtgttatgagattatgtcggtggttgaagaacttccggcccacataaaagttgtaccataagtttttcacctgattttcgaca 10149946  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 4529185 - 4529275
Alignment:
Q  9 tttgggctggagaaaatggatggaagaatcaattttggcttttgt---attttcaattcaaggatgtgttgatacaatcaagattatacaa 96  Q
    |||||||| |||||||| | ||||||||||||||||| ||| |||    ||||||| ||| |||||| | ||| |||||| ||||||||||    
T  4529185 tttgggctagagaaaattggtggaagaatcaattttgccttgtgtggagttttcaagtcatggatgtttcgatccaatcacgattatacaa 4529275  T

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