View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0977-Insertion-2 (Length: 190)
Name: NF0977-Insertion-2
Description: NF0977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0977-Insertion-2 |
 | |
|
| [»] scaffold0148 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0148 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 25731 - 25914
Alignment:
| Q |
7 |
accaacaaccctctctgtgcttgcctcagtttccttgcctccaactattcttgctagtccaaaatctgagattttcggttgcatctcctcgtctagaaga |
106 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25731 |
accaacaactctctctgtgcttgcctcagtttctttccctccaactattcttgctagtccaaaatctgagattttcggttgcatctcctcgtctagaaga |
25830 |
T |
|
| Q |
107 |
atgttgctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagagcagtccacgagcaattccgaga |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25831 |
atgttgctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagagcagtccacgagcaattccgaga |
25914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 2e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 2e-78
Query Start/End: Original strand, 7 - 190
Target Start/End: Original strand, 21917898 - 21918081
Alignment:
| Q |
7 |
accaacaaccctctctgtgcttgcctcagtttccttgcctccaactattcttgctagtccaaaatctgagattttcggttgcatctcctcgtctagaaga |
106 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||| ||| | ||||||||| |||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
21917898 |
accaacaaccctctctgtgcttgcctctgtttctttgcctgcaaatgttcttgctattccaaaatctgagatttttggttgcatctcctcatctagaaga |
21917997 |
T |
|
| Q |
107 |
atgttgctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagagcagtccacgagcaattccgaga |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21917998 |
atgttgctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagagcagtccacgggcaattccgaga |
21918081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 165
Target Start/End: Complemental strand, 3102504 - 3102383
Alignment:
| Q |
44 |
cctccaactattcttgctagtccaaaatctgagattttcggttgcatctcctcgtctagaagaatgttgctagttttcaaatctcggtgaataactctaa |
143 |
Q |
| |
|
||||||| | ||||||| |||||||||||||||||||| || | ||| || | |||| ||||| ||||||| ||||| |||| |||||||||||| | |
|
|
| T |
3102504 |
cctccaaatgttcttgcaagtccaaaatctgagatttttggattcatttcttgatctaatagaatattgctagctttcaggtctctgtgaataactctga |
3102405 |
T |
|
| Q |
144 |
gtcttgagtcttgatgaagata |
165 |
Q |
| |
|
| || ||||| | ||||||||| |
|
|
| T |
3102404 |
gcctagagtcctcatgaagata |
3102383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 19379486 - 19379401
Alignment:
| Q |
101 |
agaagaatgttgctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagagcagtccacgagcaattcc |
186 |
Q |
| |
|
||||| |||||||||| |||||| |||| |||||| | | | |||||||||| | |||||||||||||| ||| |||||||||| |
|
|
| T |
19379486 |
agaagtatgttgctagctttcaagtctctgtgaatgattttgagtcttgagtacttatgaagatagagcaatccttgagcaattcc |
19379401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 19526593 - 19526660
Alignment:
| Q |
101 |
agaagaatgttgctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagag |
168 |
Q |
| |
|
||||| |||||||||| |||||| |||| |||||||| | | |||||||||| | |||||||||||| |
|
|
| T |
19526593 |
agaagtatgttgctagctttcaagtctctgtgaataattttgagtcttgagtacttatgaagatagag |
19526660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 28; E-Value: 0.000001
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 19537487 - 19537554
Alignment:
| Q |
101 |
agaagaatgttgctagttttcaaatctcggtgaataactctaagtcttgagtcttgatgaagatagag |
168 |
Q |
| |
|
||||| |||||||||| |||||| |||| |||||||| | | |||||||||| | |||||||||||| |
|
|
| T |
19537487 |
agaagtatgttgctagctttcaagtctctgtgaataattttgagtcttgagtacttatgaagatagag |
19537554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University