View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0977-Insertion-20 (Length: 759)
Name: NF0977-Insertion-20
Description: NF0977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0977-Insertion-20 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 71 - 363
Target Start/End: Complemental strand, 22779484 - 22779189
Alignment:
| Q |
71 |
ttgatagaaacgctcaagctaaaataatgttcccctatctgctatgttttaagatcacattttcatctcattttgatgtgtttatcaattccttgccatt |
170 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
22779484 |
ttgatagaaatgctcaagctaaaataatgttcccctatctgctatgttttaagatcacattttcatctcattttgatgtgtttatccattcctttccatt |
22779385 |
T |
|
| Q |
171 |
tcaagaatataatgattctcaagctggagtttcattc-ttaccactacatgttttcaatctaaaagttgttgtataaagcattcagcatcatgggt--cc |
267 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| || |
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| T |
22779384 |
tcaagaatataatgattctcaagctggagtttcattctttaccactacatgtttttaatctaaaagttgttgtataaagtattcagcatcatgggtcccc |
22779285 |
T |
|
| Q |
268 |
taaaacacatgttactaactcatcatttagatgtgatatttatataaaaaatttaaggaagtgaggcatttgtaaattttatctgatttgtttgtg |
363 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22779284 |
taaaacacatgttactaactcatcatttatatgtgatatttatataacaaatttaaggaagtgaggcatttgtaaatttagtctgatttgtttgtg |
22779189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 1e-64; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 462 - 718
Target Start/End: Complemental strand, 37603716 - 37603460
Alignment:
| Q |
462 |
gggtctacaagtcggtagcatgaaacttcggctttggttttttgaggtgtgctacggctgctatattttgttgcagctttgtggttgttttaagcttact |
561 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||| | ||||||||||| |||| |
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| T |
37603716 |
gggtctacaagtcggtagcatggcccttcggctttggttttttgaggtatgctacggctgttattttttgttgcagctttgggtttgttttaagc-tact |
37603618 |
T |
|
| Q |
562 |
gttttgatttggctgttccctatttcaggtgttttggttcttggttttttctgcatcgggcactgctattggcaattgtttanaangaaag-nnnnnnnn |
660 |
Q |
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| T |
37603617 |
gtttggatttgactgttccccatttcaagtgttttggttcttggtttttgctgcagcaggcactgctattggcaattgtttagaaggaaagaaaaaaaaa |
37603518 |
T |
|
| Q |
661 |
nnctatctgaatgttcttttgtggcttcaagtgttcctttgtgttatgatattttgga |
718 |
Q |
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|||||||||||| |||| |||||||||| ||||||||| |||||||||||||||| |
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| T |
37603517 |
aactatctgaatgtcattttatggcttcaagcgttcctttgcgttatgatattttgga |
37603460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 255 - 413
Target Start/End: Complemental strand, 37603925 - 37603765
Alignment:
| Q |
255 |
gcatcatgggtcctaaaacacatgttactaactcatcatttagatgtgatatttatataaaaaatttaaggaag-tgaggcatttgtaaattttatctga |
353 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||| ||||||||||||| ||||| |
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| T |
37603925 |
gcatcatgggtcctaaaacacatgttactaacttatcatttagatgtgatatttatataacaaattcaaggaagctgagtcatttgtaaatttagtctga |
37603826 |
T |
|
| Q |
354 |
tttgtttgt-gttaaaggagttatactcgaagtttgggctctcattgctgccatatgttgg |
413 |
Q |
| |
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| T |
37603825 |
tgcgtttgtggttaaaggagttatattcgaagtgtgggctctcattgctgccatatgttgg |
37603765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 37603977 - 37603926
Alignment:
| Q |
56 |
aacaaataagagat-cttgatagaaacgctcaagctaaaataatgttcccct |
106 |
Q |
| |
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|||||||||||||| |||||| |||| ||||||||||||||||||||||||| |
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| T |
37603977 |
aacaaataagagattcttgattgaaatgctcaagctaaaataatgttcccct |
37603926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 1e-64; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 462 - 718
Target Start/End: Original strand, 46557277 - 46557533
Alignment:
| Q |
462 |
gggtctacaagtcggtagcatgaaacttcggctttggttttttgaggtgtgctacggctgctatattttgttgcagctttgtggttgttttaagcttact |
561 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||| | ||||||||||| |||| |
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| T |
46557277 |
gggtctacaagtcggtagcatggcccttcggctttggttttttgaggtatgctacggctgttattttttgttgcagctttgggtttgttttaagc-tact |
46557375 |
T |
|
| Q |
562 |
gttttgatttggctgttccctatttcaggtgttttggttcttggttttttctgcatcgggcactgctattggcaattgtttanaangaaag-nnnnnnnn |
660 |
Q |
| |
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| T |
46557376 |
gtttggatttgactgttccccatttcaagtgttttggttcttggtttttgctgcagcaggcactgctattggcaattgtttagaaggaaagaaaaaaaaa |
46557475 |
T |
|
| Q |
661 |
nnctatctgaatgttcttttgtggcttcaagtgttcctttgtgttatgatattttgga |
718 |
Q |
| |
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|||||||||||| |||| |||||||||| ||||||||| |||||||||||||||| |
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| T |
46557476 |
aactatctgaatgtcattttatggcttcaagcgttcctttgcgttatgatattttgga |
46557533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 255 - 413
Target Start/End: Original strand, 46557068 - 46557228
Alignment:
| Q |
255 |
gcatcatgggtcctaaaacacatgttactaactcatcatttagatgtgatatttatataaaaaatttaaggaag-tgaggcatttgtaaattttatctga |
353 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||| ||||||||||||| ||||| |
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| T |
46557068 |
gcatcatgggtcctaaaacacatgttactaacttatcatttagatgtgatatttatataacaaattcaaggaagctgagtcatttgtaaatttagtctga |
46557167 |
T |
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| Q |
354 |
tttgtttgt-gttaaaggagttatactcgaagtttgggctctcattgctgccatatgttgg |
413 |
Q |
| |
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| T |
46557168 |
tgcgtttgtggttaaaggagttatattcgaagtgtgggctctcattgctgccatatgttgg |
46557228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 46557016 - 46557067
Alignment:
| Q |
56 |
aacaaataagagat-cttgatagaaacgctcaagctaaaataatgttcccct |
106 |
Q |
| |
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|||||||||||||| |||||| |||| ||||||||||||||||||||||||| |
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| T |
46557016 |
aacaaataagagattcttgattgaaatgctcaagctaaaataatgttcccct |
46557067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 535 - 652
Target Start/End: Complemental strand, 37359928 - 37359812
Alignment:
| Q |
535 |
cagctttgtggttgttttaagcttactgttttgatttggctgttccctatttcaggtgttttggttcttggttttttctgcatcgggcactgctattggc |
634 |
Q |
| |
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|||||||| | |||||||||||| |||| || |||||||| |||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||| | |
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| T |
37359928 |
cagctttgggtttgttttaagct-actgcttggatttggccgttctttatttcaggtgtttttgttcttggtttttgctgcagtcggcactgctattgtc |
37359830 |
T |
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| Q |
635 |
aattgtttanaangaaag |
652 |
Q |
| |
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||||||||| || ||||| |
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| T |
37359829 |
aattgtttagaaggaaag |
37359812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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