View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0977-Insertion-21 (Length: 450)

Name: NF0977-Insertion-21
Description: NF0977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0977-Insertion-21
NF0977-Insertion-21
[»] chr5 (4 HSPs)
chr5 (8-450)||(38295847-38296308)
chr5 (177-300)||(38303226-38303352)
chr5 (316-365)||(38303333-38303382)
chr5 (394-446)||(35943891-35943943)
[»] chr7 (1 HSPs)
chr7 (364-446)||(27744308-27744392)
[»] chr2 (1 HSPs)
chr2 (377-446)||(17820003-17820072)
[»] chr6 (1 HSPs)
chr6 (394-446)||(12732531-12732583)
[»] chr1 (1 HSPs)
chr1 (385-439)||(44454019-44454073)
[»] chr4 (1 HSPs)
chr4 (377-438)||(50526178-50526239)
[»] chr3 (2 HSPs)
chr3 (377-446)||(49607446-49607515)
chr3 (382-446)||(1758455-1758519)


Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 450
Target Start/End: Original strand, 38295847 - 38296308
Alignment:
Q  8 cttctcacttatatatgcttggaaaattaattatatattcttcagtttccttttcccttaatggctattgaaaataataagtcttacgaattgaatgtta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38295847 cttctcacttatatatgcttggaaaattaattatatattcttcagtttccttttcccttaatggctattgaaaataataagtcttacgaattgaatgtta 38295946  T
Q  108 ggtattcagaaagtctgtgtaaaaatcatctaaaataataagatattaaatatttcttccnnnnnnnntaagatattaaatattt--aattgaagtgctt 205  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||  |||||||||||||    
T  38295947 ggtattcagaaagtctgtgtcaaaatcatctaaaataataagatattaaatatttcttccaaaaaaaataagatattaaatatttttaattgaagtgctt 38296046  T
Q  206 ttttgttcccatttggaataattcgtcacattcatgaacatggaggaaaaaacattgaaattcttttcttaattttattcttttacggtgaaatttcctt 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38296047 ttttgttcccatttggaataattcgtcacattcatgaacatggaggaaaaaacattgatattcttttcttaattttattcttttacggtgaaatttcctt 38296146  T
Q  306 caaaaagaaaatttcttttactatgaaattgttttcatatttagctgcctaaaaagaaagagttattatac--------------------atacacccc 385  Q
    |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||| ||||                    ||||||| |    
T  38296147 caaaaagaaaatttcttttac---caaattgttttcatatttagctgcctaaaaagaaagagttatgatacatagactatcttaggtgtcaatacacctc 38296243  T
Q  386 ttgatacacacacaaaaatcagacacgtggctacgtggattcaacacaagcacattttctcattc 450  Q
    || |||| |||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||    
T  38296244 ttaatacccacacaaaaatcagacacgtagctacgtggatccaacacaagcacactttctcattc 38296308  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 177 - 300
Target Start/End: Original strand, 38303226 - 38303352
Alignment:
Q  177 aagatattaaatattt-aattgaagtgcttttttgt-tcccatttggaataattcgtcacattcatgaacatggaggaaaaaacattgaaattcttttct 274  Q
    |||||||||||||||| |||||| ||  |||||| | | ||||||||||||||||   |  ||||||||||||||||||||| || | ||||| ||||||    
T  38303226 aagatattaaatattttaattgatgtaattttttttctaccatttggaataattcaagaggttcatgaacatggaggaaaaatcactaaaattgttttct 38303325  T
Q  275 taatttta-ttcttttacggtgaaatt 300  Q
    |||||||| ||||||||| ||||||||    
T  38303326 taattttatttcttttactgtgaaatt 38303352  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 38303333 - 38303382
Alignment:
Q  316 atttcttttactatgaaattgttttcatatttagctgcctaaaaagaaag 365  Q
    |||||||||||| ||||||||||||| ||||||   ||||||||||||||    
T  38303333 atttcttttactgtgaaattgttttcttatttataagcctaaaaagaaag 38303382  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 446
Target Start/End: Complemental strand, 35943943 - 35943891
Alignment:
Q  394 cacacaaaaatcagacacgtggctacgtggattcaacacaagcacattttctc 446  Q
    |||||||||||| ||||||| | ||||||||| | ||||||||||| ||||||    
T  35943943 cacacaaaaatctgacacgtagttacgtggatcccacacaagcacactttctc 35943891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 446
Target Start/End: Complemental strand, 27744392 - 27744308
Alignment:
Q  364 agagttattatacata--caccccttgatacacacacaaaaatcagacacgtggctacgtggattcaacacaagcacattttctc 446  Q
    |||||||| |||||||  ||||| ||||||| |||||||||||| |||| ||||| |||||||| |  || ||||||||||||||    
T  27744392 agagttatgatacatagacaccctttgatacccacacaaaaatctgacatgtggccacgtggatccctcataagcacattttctc 27744308  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 446
Target Start/End: Complemental strand, 17820072 - 17820003
Alignment:
Q  377 atacaccccttgatacacacacaaaaatcagacacgtggctacgtggattcaacacaagcacattttctc 446  Q
    ||||||||||||| || |||||||||||| |||| |||| ||||||||  | |||||| |||||||||||    
T  17820072 atacaccccttgacacccacacaaaaatctgacatgtggttacgtggaccccacacaaacacattttctc 17820003  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 12732531 - 12732583
Alignment:
Q  394 cacacaaaaatcagacacgtggctacgtggattcaacacaagcacattttctc 446  Q
    |||||||||||| |||||||||||| |||||| | ||| ||||||||||||||    
T  12732531 cacacaaaaatctgacacgtggctatgtggatcccacataagcacattttctc 12732583  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 439
Target Start/End: Original strand, 44454019 - 44454073
Alignment:
Q  385 cttgatacacacacaaaaatcagacacgtggctacgtggattcaacacaagcaca 439  Q
    |||||||| |||||||||||| |||| |||| ||||||||| | |||||||||||    
T  44454019 cttgatacccacacaaaaatctgacatgtggttacgtggatcccacacaagcaca 44454073  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 438
Target Start/End: Complemental strand, 50526239 - 50526178
Alignment:
Q  377 atacaccccttgatacacacacaaaaatcagacacgtggctacgtggattcaacacaagcac 438  Q
    |||||||| |||| || |||||||||||| |||||||||  ||||||||||  |||||||||    
T  50526239 atacaccctttgacacccacacaaaaatctgacacgtggtcacgtggattccgcacaagcac 50526178  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 446
Target Start/End: Original strand, 49607446 - 49607515
Alignment:
Q  377 atacaccccttgatacacacacaaaaatcagacacgtggctacgtggattcaacacaagcacattttctc 446  Q
    |||||||| |||| || |||||||||||| ||||||| |  |||||||| | ||||||||||| ||||||    
T  49607446 atacaccctttgacacccacacaaaaatctgacacgtagtcacgtggatcccacacaagcacactttctc 49607515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 446
Target Start/End: Complemental strand, 1758519 - 1758455
Alignment:
Q  382 ccccttgatacacacacaaaaatcagacacgtggctacgtggattcaacacaagcacattttctc 446  Q
    |||||||| || |||||||||||| ||||  ||| |||||||| || |||||| |||||||||||    
T  1758519 ccccttgacacccacacaaaaatctgacatatggttacgtggactccacacaaacacattttctc 1758455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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