View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0977-Insertion-4 (Length: 303)

Name: NF0977-Insertion-4
Description: NF0977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0977-Insertion-4
NF0977-Insertion-4
[»] chr4 (1 HSPs)
chr4 (8-303)||(8006742-8007037)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 303
Target Start/End: Original strand, 8006742 - 8007037
Alignment:
Q  8 agtcactgacataaaaatggaaatttctaattaagaaatgaaattacttctcttttaatggctggatgtaataaacagcatctaatgatggtaatggttg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8006742 agtcactgacataaaaatggaaatttctaattaagaaatgaaattacttctcttttgatggctggatgtaataaacagcatctaatgatggtaatggttg 8006841  T
Q  108 ccttctacggaaaaggtcttccaccactgcaattagaggtcttacatcaaatttttaacagcataaccacagaacttgtaatgcagaaaagttagctcat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8006842 ccttctacggaaaaggtcttccaccactgcaattagaggtcttacatcaaatttttaacagcataaccacagaacttgtaatgcagaaaagttagctcat 8006941  T
Q  208 tgcatatcaggcgtaaacgttaaaaaacaggaaacagaagaaagcatctcatttatggtcaatattcaaagataagaataactaccatcacgtgta 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8006942 tgcatatcaggcgtaaacgttaaaaaacaggaaacagaagaaagcatctcatttatggtcaatattcaaagacaagaataactaccatcacgtgta 8007037  T

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