View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0977-Insertion-9 (Length: 365)
Name: NF0977-Insertion-9
Description: NF0977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0977-Insertion-9 |
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| [»] chr2 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 365
Target Start/End: Complemental strand, 12813550 - 12813198
Alignment:
| Q |
8 |
agaaaaccacttttgcaatcatctgtcaaaccctcaaacgaaactaatcaccaatcttactcttcctctttcnnnnnnnnncaattcaaacaatgataga |
107 |
Q |
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| T |
12813550 |
agaaaaccacttttgcaatcatctgtcaaaccctcaaacgaaactaatcaccaatcttactcttcctctttctttgttt--caattcaaacagtgataga |
12813453 |
T |
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| Q |
108 |
gatgatttatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacattgtatcttttgaa |
207 |
Q |
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| T |
12813452 |
gatgatttatgggtttcaaagaaagagataatgatatttgaaacttttcaatttcgtcgatgcaggagaatgattggaaagaaacattgtatcttttgaa |
12813353 |
T |
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| Q |
208 |
gctattcattttcttcaatccttctctaatttgaagacctaataatgtttaaatgcatatggttattaattttgaagaggcacataggatgatttttatt |
307 |
Q |
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| T |
12813352 |
gctattcattttcttcaattcttctctaatttgaagacctagtaatgtttaaatgcatatggttcttaattttgaagaggcacataggatgacttttatt |
12813253 |
T |
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| Q |
308 |
ttgaagggttgatgaactatgaagatgatgatgatgttctgtgttgttgtcttgttgt |
365 |
Q |
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| T |
12813252 |
ttgaagggttgatgaactatgaagatgat---gatgtgctgtgttgttgtcttgttgt |
12813198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 95 - 365
Target Start/End: Complemental strand, 22418305 - 22418035
Alignment:
| Q |
95 |
aaacaatgatagagatgatttatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacat |
194 |
Q |
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| T |
22418305 |
aaacaatgatagagatgatatatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacat |
22418206 |
T |
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| Q |
195 |
tgtatcttttgaagctattcattttcttcaatccttctctaatttgaagacctaataatgtttaaatgcatatggttattaattttgaagaggcacatag |
294 |
Q |
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| T |
22418205 |
tgtatcttttgaagctattcattttcttcaatcctactctaatttgaagacctagtaatgtttaaatgcatatggttcttaattttgaagaggcacatag |
22418106 |
T |
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| Q |
295 |
gatgatttttattttgaagggttgatgaactatgaagatgatgatgatgttctgtgttgttgtcttgttgt |
365 |
Q |
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| T |
22418105 |
gatgatttttattttgaagggttgatgaactatgaagatgatgatgatgtgttgtgttgttgtattgttgt |
22418035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 190
Target Start/End: Complemental strand, 14998449 - 14998348
Alignment:
| Q |
89 |
caattcaaacaatgatagagatgatttatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaag |
188 |
Q |
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| T |
14998449 |
caattcaaacagtgataaagatgatttctgggtttgaaagaaagagataatgatattttaagcttttcaattttgtagatacatgagaaagatttgaaag |
14998350 |
T |
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| Q |
189 |
aa |
190 |
Q |
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|| |
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| T |
14998349 |
aa |
14998348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 14998326 - 14998276
Alignment:
| Q |
289 |
acataggatgatttttattttgaagggttgatgaactatgaagatgatgat |
339 |
Q |
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| T |
14998326 |
acataagatgatttttattttgaagggtttatgaattatgaagatgatgat |
14998276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 48292634 - 48292701
Alignment:
| Q |
4 |
aacaagaaaaccacttttgcaatcatctgtcaaaccctcaaacgaaactaatcaccaatcttactctt |
71 |
Q |
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| T |
48292634 |
aacaagaaagccacttttgctctcatctgtcaaaccctcaaacgtaactaatcaccattctcactctt |
48292701 |
T |
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