View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0977_low_2 (Length: 248)
Name: NF0977_low_2
Description: NF0977
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0977_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 25218145 - 25217926
Alignment:
| Q |
1 |
taccaatctattcatagtttatttgg-gatgaagatgatgacaagcatgtaagttttggaaagaagaaagaattgtgaggagttattgagaatacacata |
99 |
Q |
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| T |
25218145 |
taccaatctattcatagttttttttgtgacgaagatgatgacaaacatgtaagttttggaaagaagaaagaattgtgaggagttattgagaatgcacata |
25218046 |
T |
|
| Q |
100 |
ttatcatcagttgtctaattaagcttgtgaaagttataaaggaatttcattgcctattaaaacatttttccagtgttgataatctacttatttttggatg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||| |
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| T |
25218045 |
ttatcatcagttgtctaattaagcttgtgaaagttataaaggaatttcattgcctattaaaacatttttacaatgttaataatctacttatttttggatg |
25217946 |
T |
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| Q |
200 |
taagttagacagtacaaaaa |
219 |
Q |
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|||||||||||||||||||| |
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| T |
25217945 |
taagttagacagtacaaaaa |
25217926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 25282300 - 25282081
Alignment:
| Q |
1 |
taccaatctattcatagtttatttgg-gatgaagatgatgacaagcatgtaagttttggaaagaagaaagaattgtgaggagttattgagaatacacata |
99 |
Q |
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|||||||||||||||||||| ||| | || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25282300 |
taccaatctattcatagttttttttgtgacgaagatgatgacaaacatgtaagttttggaaagaagaaagaattgtgaggagttattgagaatgcacata |
25282201 |
T |
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| Q |
100 |
ttatcatcagttgtctaattaagcttgtgaaagttataaaggaatttcattgcctattaaaacatttttccagtgttgataatctacttatttttggatg |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||| |
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| T |
25282200 |
ttatcatcagttgtctaattaagcttgtgaaagttataaaggaatttcattgcctattaaaacatttttacaatgttaataatctacttatttttggatg |
25282101 |
T |
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| Q |
200 |
taagttagacagtacaaaaa |
219 |
Q |
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|||||||||||||||||||| |
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| T |
25282100 |
taagttagacagtacaaaaa |
25282081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 37158809 - 37158858
Alignment:
| Q |
23 |
ttgggatgaagatgatgacaagcatgtaagttttggaaagaagaaagaat |
72 |
Q |
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| T |
37158809 |
ttgggatgaagatgatgacaatcatgtaattttcggcaagaagaaagaat |
37158858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 43392149 - 43392189
Alignment:
| Q |
87 |
gagaatacacatattatcatcagttgtctaattaagcttgt |
127 |
Q |
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|||||| ||||||||||||||| | |||||||||||||||| |
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| T |
43392149 |
gagaatgcacatattatcatcaatggtctaattaagcttgt |
43392189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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