View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0978_low_1 (Length: 767)

Name: NF0978_low_1
Description: NF0978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0978_low_1
NF0978_low_1
[»] chr4 (17 HSPs)
chr4 (30-751)||(5509681-5510415)
chr4 (221-389)||(5489429-5489594)
chr4 (223-384)||(5981058-5981219)
chr4 (94-406)||(5446022-5446333)
chr4 (609-748)||(5489010-5489149)
chr4 (229-339)||(5435516-5435626)
chr4 (223-389)||(5995981-5996147)
chr4 (236-389)||(5457409-5457562)
chr4 (99-177)||(5489630-5489708)
chr4 (609-755)||(5457869-5458015)
chr4 (609-733)||(5435977-5436101)
chr4 (103-177)||(5457280-5457354)
chr4 (236-402)||(5632269-5632435)
chr4 (613-728)||(5446603-5446718)
chr4 (672-725)||(5996507-5996560)
chr4 (99-166)||(5435389-5435456)
chr4 (537-586)||(5996354-5996403)


Alignment Details
Target: chr4 (Bit Score: 522; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 30 - 751
Target Start/End: Complemental strand, 5510415 - 5509681
Alignment:
Q  30 aaatcaaccaactagtttgtttttgctttgatgtcaaaaccggtaaaaagtgtctggtaaaaaatttccaa----gtccactagtcagggtaaattttga 125  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||  || ||    || ||||||||||||||||||||||    
T  5510415 aaatcaaccaactagtttgtttttgctttgatgtcaaaaccagtaaaaagggtctgataaaaaacgtctaattaagtacactagtcagggtaaattttga 5510316  T
Q  126 tgtgaagaatgcttgaaggaagctcaaagcctacaccacaagtaaagggaatacaagaggttnnnnnnnnnnnnnnnngtaataaattcagtaattaaat 225  Q
    |||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||    
T  5510315 tgtgaataatgcttgaaggaagctcttagcctacaccacaagtaaagggaatacaagaggttaaaaaaacagaaaaaagtaataaattcagtaattaaat 5510216  T
Q  226 aatagccaccttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggcttaattctttcagatatgaaagaaaagaattag 325  Q
    ||||||||||||||||| |||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5510215 aatagccaccttacctcttcttcaccaacggtaatcacggccacttcaaggtcatcaagaggaaggcttaattctttcagatatgaaagaaaagaattag 5510116  T
Q  326 cagcaagtggttttgcttctagatcatctcctaacacataaaatgctgctctcttcacaaatcctacagcaccttctcttgggtcgagttcagtcacgct 425  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5510115 cagcaagtggttttacttctagatcatctcctaacacataaaatgctgctctcttcacaaatcctacagcaccttctcttgggtcaagttcagtcacgct 5510016  T
Q  426 tcttcgattaacaattgatacatttgaattagaaatcacttcctctattgtattataatca---------tcattgtgatgaataccataataataatca 516  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||| |    
T  5510015 tcttcgattaacaattgatacatgtgaattagaaatcacttcctctattgtattataatcatcatcatcatcattgtgatgaataccataataataatga 5509916  T
Q  517 ttatagaattttaaaggaaaaatgtcgaggggttggtttggacaaccatagtgtggtgcaatacaaggatggagcaacttagacatgggattcaagttct 616  Q
    | |  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5509915 tcagggaattttaaaggaaaaatgttgaggggttggtttggacaaccatagtgtggtgcaatacaaggatggagcaactcagacatgggattcaagttct 5509816  T
Q  617 tcacactcttgtacaaattaccaacacatctaggaaaaatgttcggaattaaaatctttaaaatggaccctaatggaatggtaaggaagccaaaaatgaa 716  Q
    |||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5509815 tcacactcttgtacaaattaccaacacatctaggaaaattgttgggtattaaaatctttaaaatggaccctaatggaatggtaaggaagccaagaatgaa 5509716  T
Q  717 gtcaacaaaatctccatcagcttctgcaatgacga 751  Q
    ||||| |||||||||||||||||||||| ||||||    
T  5509715 gtcaataaaatctccatcagcttctgcactgacga 5509681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 221 - 389
Target Start/End: Complemental strand, 5489594 - 5489429
Alignment:
Q  221 taaataatagccaccttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggcttaattctttcagatatgaaagaaaaga 320  Q
    ||||| |||||||| |||||||| ||||||||||| |   |||  |||||||||||||||||||||||||||||||| |||||| ||||||||| |||||    
T  5489594 taaatgatagccacattacctcagcttcaccaatgct---caccttcacttcaagatcatcaagaggaaggcttaatactttcaaatatgaaagcaaaga 5489498  T
Q  321 attagcagcaagtggttttgcttctagatcatctcctaacacataaaatgctgctctcttcacaaatcc 389  Q
    |||||||| |||||||||| | | ||||||||||||||   |||| |||| ||||||||||||||||||    
T  5489497 attagcagaaagtggttttacatttagatcatctcctataccatataatgttgctctcttcacaaatcc 5489429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 223 - 384
Target Start/End: Original strand, 5981058 - 5981219
Alignment:
Q  223 aataatagccaccttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggcttaattctttcagatatgaaagaaaagaat 322  Q
    |||||||||||| |||||||| ||||||||||| | |||||  ||||||||||||||||||| |||| ||| |||||||||| |||||||||  ||||||    
T  5981058 aataatagccactttacctcagcttcaccaatgcttatcaccttcacttcaagatcatcaaggggaaagctcaattctttcaaatatgaaagccaagaat 5981157  T
Q  323 tagcagcaagtggttttgcttctagatcatctcctaacacataaaatgctgctctcttcaca 384  Q
    |||||| ||||| |||| ||| ||||||||||||||  ||||| ||||||| ||||||||||    
T  5981158 tagcagaaagtgattttacttttagatcatctcctacaacatataatgctggtctcttcaca 5981219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 94 - 406
Target Start/End: Original strand, 5446022 - 5446333
Alignment:
Q  94 tttccaagtccactagtcagggtaaattttgatgtgaagaatgcttgaaggaagctcaaagcctacaccacaagtaaagggaatacaagaggttnnnnnn 193  Q
    ||||| ||||||||||||| |||||| |||| ||| |||||||||| ||||||||||||||||||||| ||||||||| |||||  ||||||||          
T  5446022 tttcccagtccactagtcaaggtaaactttgctgtcaagaatgctttaaggaagctcaaagcctacacaacaagtaaaaggaatcaaagaggttataaaa 5446121  T
Q  194 nnnnnnnnnngtaataaattcagtaattaaataatagccaccttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggct 293  Q
               || |||||||| |||| |||||||| ||| ||||||||  ||||||||||| | |||||   ||||| |||||| ||||  || |||||    
T  5446122 acgaaaaaaatta-taaattcactaataaaataatatccaacttacctcggcttcaccaatgcttatcacctccacttgaagatcttcaatggggaggct 5446220  T
Q  294 taattctttcagatatgaaagaaaagaattagcagcaagtggttttgcttctagatcatctcctaacacataaaatgctgctctcttcacaaatcctaca 393  Q
    ||||||||||| |||| |||| ||||||||||||| ||||| |||| ||| ||||||||||||||   |||| ||||||  ||| | ||||||||| |||    
T  5446221 taattctttcaaatataaaaggaaagaattagcagaaagtgattttacttttagatcatctcctacaccatataatgctagtctttgcacaaatcccaca 5446320  T
Q  394 gcaccttctcttg 406  Q
     ||||||| ||||    
T  5446321 acaccttcccttg 5446333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 609 - 748
Target Start/End: Complemental strand, 5489149 - 5489010
Alignment:
Q  609 caagttcttcacactcttgtacaaattaccaacacatctaggaaaaatgttcggaattaaaatctttaaaatggaccctaatggaatggtaaggaagcca 708  Q
    |||||||| ||||||||||||||||||||||||||||| || ||||  ||||||    |||| ||||| |||||| |||||||| |||||||| |||| |    
T  5489149 caagttctccacactcttgtacaaattaccaacacatccagcaaaagagttcggtcccaaaagctttacaatggatcctaatggcatggtaagaaagcta 5489050  T
Q  709 aaaatgaagtcaacaaaatctccatcagcttctgcaatga 748  Q
    || |||||||||||||||||| |||  |||||||||||||    
T  5489049 aagatgaagtcaacaaaatcttcattggcttctgcaatga 5489010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 229 - 339
Target Start/End: Original strand, 5435516 - 5435626
Alignment:
Q  229 agccaccttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggcttaattctttcagatatgaaagaaaagaattagcag 328  Q
    |||||| |||||||| ||||||||||| | |||||  ||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||||| ||    
T  5435516 agccacattacctcagcttcaccaatgcttatcaccttcacttcaagatcatcaagaggaagacttaattctttcaaatataaaaggaaagaattagtag 5435615  T
Q  329 caagtggtttt 339  Q
     ||||||||||    
T  5435616 aaagtggtttt 5435626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 223 - 389
Target Start/End: Original strand, 5995981 - 5996147
Alignment:
Q  223 aataatagccaccttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggcttaattctttcagatatgaaagaaaagaat 322  Q
    |||| ||| ||| |||||||| ||||||||||| | |||||  |||||||||||||| |||| |||| ||| |||||||||| |||||||||  ||||||    
T  5995981 aatagtagtcactttacctcagcttcaccaatgcttatcacattcacttcaagatcaacaaggggaaagctcaattctttcaaatatgaaaggcaagaat 5996080  T
Q  323 tagcagcaagtggttttgcttctagatcatctcctaacac-ataaaatgctgctctcttcacaaatcc 389  Q
    |||||| ||  |||||| ||| ||||||||||||| |||| ||| ||||| | |||||||||||||||    
T  5996081 tagcagaaaaaggttttacttttagatcatctcct-acactatataatgccggtctcttcacaaatcc 5996147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 236 - 389
Target Start/End: Original strand, 5457409 - 5457562
Alignment:
Q  236 ttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggcttaattctttcagatatgaaagaaaagaattagcagcaagtgg 335  Q
    |||||||| ||||||||||| | |||||  || |||||||||| ||||||| ||||||||||||||||| | || |||| ||||||||||||| | ||||    
T  5457409 ttacctcagcttcaccaatgcttatcacattcgcttcaagatcgtcaagagaaaggcttaattctttcaaacataaaaggaaagaattagcagaatgtgg 5457508  T
Q  336 ttttgcttctagatcatctccta-acacataaaatgctgctctcttcacaaatcc 389  Q
    |||| ||| |||||||| | ||| ||| ||| |||||||||||||| ||||||||    
T  5457509 ttttacttttagatcattttctacaca-atataatgctgctctctttacaaatcc 5457562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 5489708 - 5489630
Alignment:
Q  99 aagtccactagtcagggtaaattttgatgtgaagaatgcttgaaggaagctcaaagcctacaccacaagtaaagggaat 177  Q
    |||||||||||||| ||||||| ||||||| |||||||||  |||||||||||||||||||||||||| ||||||||||    
T  5489708 aagtccactagtcaaggtaaatcttgatgtcaagaatgctccaaggaagctcaaagcctacaccacaattaaagggaat 5489630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 609 - 755
Target Start/End: Original strand, 5457869 - 5458015
Alignment:
Q  609 caagttcttcacactcttgtacaaattaccaacacatctaggaaaaatgttcggaattaaaatctttaaaatggaccctaatggaatggtaaggaagcca 708  Q
    |||||||| ||||||||||||||||||||||||||||| || |||| | || |    |||||  |||| ||  ||||||||||| |  | |||||||| |    
T  5457869 caagttctccacactcttgtacaaattaccaacacatccagcaaaattattagcccctaaaagatttacaactgaccctaatggcaccgcaaggaagcta 5457968  T
Q  709 aaaatgaagtcaacaaaatctccatcagcttctgcaatgacgatatt 755  Q
    ||||||||||||||||||||||||| || |||||||| ||| |||||    
T  5457969 aaaatgaagtcaacaaaatctccattagtttctgcaaagactatatt 5458015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 609 - 733
Target Start/End: Original strand, 5435977 - 5436101
Alignment:
Q  609 caagttcttcacactcttgtacaaattaccaacacatctaggaaaaatgttcggaattaaaatctttaaaatggaccctaatggaatggtaaggaagcca 708  Q
    |||||||  ||||||||||||||||||||||||||||| || ||||  ||| |    |||||  |||| |||||| |||||||| |  ||||||||||      
T  5435977 caagttcaccacactcttgtacaaattaccaacacatccagcaaaagagttagctcctaaaagttttacaatggagcctaatggcaccgtaaggaagctt 5436076  T
Q  709 aaaatgaagtcaacaaaatctccat 733  Q
    |||||||||||||||||||||||||    
T  5436077 aaaatgaagtcaacaaaatctccat 5436101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 5457280 - 5457354
Alignment:
Q  103 ccactagtcagggtaaattttgatgtgaagaatgcttgaaggaagctcaaagcctacaccacaagtaaagggaat 177  Q
    |||||||| | ||||||| ||||||| |||||||||  |||||||||||||||||||||| ||| ||||||||||    
T  5457280 ccactagttaaggtaaatcttgatgtcaagaatgctccaaggaagctcaaagcctacaccgcaattaaagggaat 5457354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 236 - 402
Target Start/End: Complemental strand, 5632435 - 5632269
Alignment:
Q  236 ttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggcttaattctttcagatatgaaagaaaagaattagcagcaagtgg 335  Q
    |||||||| ||||||| ||| | |||||  ||| ||| ||||||||||| || |||||||||||||||| ||||||||   ||||| || ||| ||||||    
T  5632435 ttacctcagcttcaccgatgcttatcaccttcatttccagatcatcaagggggaggcttaattctttcaaatatgaaatgcaagaactaccagaaagtgg 5632336  T
Q  336 ttttgcttctagatcatctcctaacacataaaatgctgctctcttcacaaatcctacagcaccttct 402  Q
    |||| ||  |||||||||||| |   |||| |||| |||  ||||||||||||| | | ||||||||    
T  5632335 ttttactgttagatcatctccaatagcatataatgttgcattcttcacaaatcccataacaccttct 5632269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 613 - 728
Target Start/End: Original strand, 5446603 - 5446718
Alignment:
Q  613 ttcttcacactcttgtacaaattaccaacacatctaggaaaaatgttcggaattaaaatctttaaaatggaccctaatggaatggtaaggaagccaaaaa 712  Q
    |||| ||||||||||||||||||||||||||||| || || |   ||   |   |||| ||||| |||||| |||||||| ||||||||||||| |||||    
T  5446603 ttctccacactcttgtacaaattaccaacacatccagcaatagaattaccatccaaaagctttacaatggatcctaatggcatggtaaggaagctaaaaa 5446702  T
Q  713 tgaagtcaacaaaatc 728  Q
    ||||| ||||||||||    
T  5446703 tgaagccaacaaaatc 5446718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 672 - 725
Target Start/End: Original strand, 5996507 - 5996560
Alignment:
Q  672 ctttaaaatggaccctaatggaatggtaaggaagccaaaaatgaagtcaacaaa 725  Q
    ||||| ||||||||||||||| || |||||||||| ||| ||||||||||||||    
T  5996507 ctttacaatggaccctaatggtattgtaaggaagctaaacatgaagtcaacaaa 5996560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 5435389 - 5435456
Alignment:
Q  99 aagtccactagtcagggtaaattttgatgtgaagaatgcttgaaggaagctcaaagcctacaccacaa 166  Q
    |||||||||||||| ||||||| ||||||| |||||||    ||||| || |||||||||||||||||    
T  5435389 aagtccactagtcaaggtaaatcttgatgtcaagaatgtcccaaggatgcccaaagcctacaccacaa 5435456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 586
Target Start/End: Original strand, 5996354 - 5996403
Alignment:
Q  537 aatgtcgaggggttggtttggacaaccatagtgtggtgcaatacaaggat 586  Q
    ||||| |||||| ||||||||||||||| |||||||||||| || |||||    
T  5996354 aatgttgaggggctggtttggacaaccaaagtgtggtgcaacaccaggat 5996403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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