View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0978_low_2 (Length: 390)
Name: NF0978_low_2
Description: NF0978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0978_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 107 - 342
Target Start/End: Original strand, 25739462 - 25739697
Alignment:
| Q |
107 |
caactatatttttgtaaattgatgttatatgtgtccaacatcgtaggtatgtttaagattgttgtttgtgtgttaaagttcatgtctctcggttaaaatg |
206 |
Q |
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| T |
25739462 |
caactatatttttgtaaattgatgttatatatgtccaacatcgtaggtatgtttaaggttgttgtttgtgtgttaaagtccatgtctctcagttaaaatg |
25739561 |
T |
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| Q |
207 |
tttaggatattttgtttttgcttctaaacctttgtttcatacattgatcaaattgttttctcgtctgtctgtctttccttagaaattttccctttattat |
306 |
Q |
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| T |
25739562 |
tttaggatattttgtttttgcttctaaacctttgtttcatacattgatcaaattgttttctcgtctgtctgtctttccttagaaattttccctttattat |
25739661 |
T |
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| Q |
307 |
tgagaaatttgaagtccttggtgtttttgtggatat |
342 |
Q |
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| T |
25739662 |
tgagaaatttgaagtacttggtgtttttgtggatat |
25739697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 138 - 340
Target Start/End: Original strand, 25743099 - 25743302
Alignment:
| Q |
138 |
tgtccaacatcgtaggtatgtttaagattgttgtttgtgtgttaaagttcatgtctc--tcggttaaaatgtttaggatattttgtttttgcttctaaac |
235 |
Q |
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| T |
25743099 |
tgtccaacatcttaggtatgtttaaggttgttgtttgtgtgttcaagttcatgtctcactcagttaaaatgtttaagatattt-gtttttgcttctaaac |
25743197 |
T |
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| Q |
236 |
ctttgtttcatacattgatcaaattgttttctcgtctgtctgtctttccttagaaattttccctttattattgagaaatttgaagtccttggtgtttttg |
335 |
Q |
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| T |
25743198 |
ttttatttcagactttgatcaaattgttttctcttctgtctgtcttaccttagaaattttcattttattattgagaaatttgaagtacttggtgtttttt |
25743297 |
T |
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| Q |
336 |
tggat |
340 |
Q |
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| T |
25743298 |
tggat |
25743302 |
T |
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