View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0978_low_3 (Length: 390)
Name: NF0978_low_3
Description: NF0978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0978_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 87 - 364
Target Start/End: Original strand, 29191762 - 29192039
Alignment:
| Q |
87 |
aaccgtcctccacgtggcacatggatctcctcctccacccccgctttcctccgtttctcctccgatctcaacttctccgatgtcgtcctcaccgttgcat |
186 |
Q |
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| T |
29191762 |
aaccgtcctccacgtggcacatggatctcctcctccacctccgctttcctccgtttctcctccgatctcaacttctccgatgtcgtcctcaccgttgcat |
29191861 |
T |
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| Q |
187 |
tcaacgccaaactccttgtaactccgatcacttttcctttttcgatttcgtttctgttttcgctattacgtaatccatgcaactgaattttgattatcgg |
286 |
Q |
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| T |
29191862 |
tcaacgccaaactccttgtaactccgataacttttcctttttcgatttcgtttctgttttcgctattacgtaatccatgcaactgaattttgattatcgg |
29191961 |
T |
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| Q |
287 |
aagtgacgaagcttgattcagtgttttcggagtgtttgtatattttttgtgtgtattggatcggtagtgatattgttg |
364 |
Q |
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| T |
29191962 |
aagtgacgaagcttgattcagtgttttcggagtgtttgtatattttttgtgtgtattggatcggaagtgattttgttg |
29192039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 87 - 316
Target Start/End: Complemental strand, 33634072 - 33633842
Alignment:
| Q |
87 |
aaccgtcctccacgtggcacatggatctcctcctccacccccgctttcctccgtttctcctccgatctcaacttctccgatgtcgtcctcaccgttgcat |
186 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| | |
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| T |
33634072 |
aaccgtcctccacgtggcacatggatctcctcctccacctccgctttcctccgattctcctccgatctcaacttctccgacgtcgttctcaccgttgcct |
33633973 |
T |
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| Q |
187 |
tcaacgccaaactccttgtaactccgatcacttttcctttttcgatttcgtttctgtttt-cgctattacgtaatccatgcaactgaattttgattatcg |
285 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| ||||||||||||||| ||||||| |
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| T |
33633972 |
tcaacgctaaactcctcgtaactccgatcacttttcctttttcgatttcatttctgttttatgctattacttaatcgatgcaactgaattttcattatcg |
33633873 |
T |
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| Q |
286 |
gaagtgacgaagcttgattcagtgttttcgg |
316 |
Q |
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| T |
33633872 |
gaagtgacgaagcttgattcagtgttttcgg |
33633842 |
T |
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