View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0978_low_5 (Length: 251)
Name: NF0978_low_5
Description: NF0978
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0978_low_5 |
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| [»] scaffold0368 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: scaffold0368 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0368
Description:
Target: scaffold0368; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 1787 - 2029
Alignment:
| Q |
10 |
attattctcgtcaaataaatgcaaaacgcataaatactcacgaaaa-aacaaaagaatacaatccggtgcgcaaatatacggaacacctctcaaaagcca |
108 |
Q |
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| T |
1787 |
attattctcatcaaataaatgcaaaacgcataaatactcacgaaaaaaacaaaagaatacaatccggtgcgcaaatatacggaacacctctcaaaagcca |
1886 |
T |
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| Q |
109 |
aagttcaaaactacccaaaacaatgaggccggagtatacgaacgtgcaatgcaccaaccgcatacccacacctcacaattcagaacaatggcatctcatg |
208 |
Q |
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| T |
1887 |
aagttcaaaactacccaaaacaataaggccggagtatacgaacgtgcaatgcaccaaccgcatacccacacctcacaattcagaacaatggcatctcatg |
1986 |
T |
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| Q |
209 |
aagccaaaaacccagcacaaaaccaactgccaagccaacctcc |
251 |
Q |
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| T |
1987 |
aagccaaaaacccagcacaaaaccaactgccaagccaacctcc |
2029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 38296424 - 38296666
Alignment:
| Q |
10 |
attattctcgtcaaataaatgcaaaacgcataaatactcacgaaaa-aacaaaagaatacaatccggtgcgcaaatatacggaacacctctcaaaagcca |
108 |
Q |
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| T |
38296424 |
attattctcatcaaataaatgcaaaacgcataaatactcacgaaaaaaacaaaagaatacaatccggtgcgcaaatatacggaacacctctcaaaagcca |
38296523 |
T |
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| Q |
109 |
aagttcaaaactacccaaaacaatgaggccggagtatacgaacgtgcaatgcaccaaccgcatacccacacctcacaattcagaacaatggcatctcatg |
208 |
Q |
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| T |
38296524 |
aagttcaaaactacccaaaacaataaggccggagtatacgaacgtgcaatgcaccaaccgcatacccacacctcacaattcagaacaatggcatctcatg |
38296623 |
T |
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| Q |
209 |
aagccaaaaacccagcacaaaaccaactgccaagccaacctcc |
251 |
Q |
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| T |
38296624 |
aagccaaaaacccagcacaaaaccaactgccaagccaacctcc |
38296666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 187
Target Start/End: Complemental strand, 24018932 - 24018795
Alignment:
| Q |
51 |
gaaaaaacaaaagaatacaatccggtg-cgcaaatatacggaacacctctcaaaagccaaag-ttcaaaactacccaaaacaatgaggccggagtatacg |
148 |
Q |
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|||||||||| ||||||||| | |||| | || |||||||||||||| ||||||||| |||| ||||| |||||||| ||||| ||||||||||||| |
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| T |
24018932 |
gaaaaaacaatagaatacaaac-ggtgtcacatatatacggaacacccctcaaaagctaaagacaaaaaaccacccaaaataatgatgccggagtatacg |
24018834 |
T |
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| Q |
149 |
aacgtgcaatgcaccaaccgcatacccacacctcacaat |
187 |
Q |
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||| || | |||||| |||||||||||| ||||||||| |
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| T |
24018833 |
cacgggcgaagcaccagccgcatacccacgcctcacaat |
24018795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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