View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0979-INSERTION-1 (Length: 801)
Name: NF0979-INSERTION-1
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-1 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0157 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 5e-83; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 474 - 709
Target Start/End: Original strand, 864071 - 864311
Alignment:
| Q |
474 |
ttagactcataataggaaaacaacaattatattgcacccctcttaatagaaaaacaatataattttttctcacatttgaataaattcgatcaaaaaagta |
573 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
864071 |
ttagcctcataataggaaaacaacaattatattgcacccctcttaatagaaaaacaatataattttttctcgcatttgaataaattcgatcaaaaaagta |
864170 |
T |
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| Q |
574 |
tt-cttttttctgtctggatgagtaaatccaaacaagaagggattttaaaaattatggggttgaaaaagaagccgtttcttcgaattattctt----nnn |
668 |
Q |
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|| ||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
864171 |
ttatttttttctgtccgaatgagtaaatccaaacaagaagggtttttaaaaattatggggttgaaaaagaagccgtttcttcgaaattttcttttaaaaa |
864270 |
T |
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| Q |
669 |
nnnnnntcagattgttgtaatgacattgttgtgtttacttg |
709 |
Q |
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| T |
864271 |
aaaaaatcagattgttgtaatgacattgttgtgtttacttg |
864311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 283 - 431
Target Start/End: Original strand, 863880 - 864028
Alignment:
| Q |
283 |
ctcacatttagattagctcttgtacaatgtgacaaacgattggattgttctctatattttgagtaagttatttccaaaaattattatgtaattttttcta |
382 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
863880 |
ctcacatttagattagctcttgtacaatgtgacaaacaattggattgttctctatattttgagtaagttatttccacaaattattatgtaattttttcta |
863979 |
T |
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| Q |
383 |
tacttatgagagtttagtttaaaatcannnnnnnaatttctgtgtgatt |
431 |
Q |
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| T |
863980 |
cacttatgagagtttagtttaaaatcattttttaaatttctgtgtgatt |
864028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 735 - 801
Target Start/End: Original strand, 864346 - 864412
Alignment:
| Q |
735 |
caattttgaccattttgcagatttggtccttctattttaaaatttgacagttttcatcctttcatca |
801 |
Q |
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| T |
864346 |
caattttgaccattttgcagatttggtccttctattttaaaatttgacagttttcatcctttcatca |
864412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 737 - 793
Target Start/End: Original strand, 39450642 - 39450698
Alignment:
| Q |
737 |
attttgaccattttgcagatttggtccttctattttaaaatttgacagttttcatcc |
793 |
Q |
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| T |
39450642 |
attttcaccattttgcagaattggtccccctattttaaaatttgacagttttgatcc |
39450698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 737 - 801
Target Start/End: Original strand, 42055308 - 42055371
Alignment:
| Q |
737 |
attttgaccattttgcagatttggtccttctattttaaaatttgacagttttcatcctttcatca |
801 |
Q |
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| T |
42055308 |
atttttaccattttgtagaattggtccct-tattttaaaatttgacagttttaatcccttcatca |
42055371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 737 - 788
Target Start/End: Complemental strand, 23416190 - 23416140
Alignment:
| Q |
737 |
attttgaccattttgcagatttggtccttctattttaaaatttgacagtttt |
788 |
Q |
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| T |
23416190 |
attttcaccattttgcagttttggtccc-ctattttaaaatttgacagtttt |
23416140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 737 - 788
Target Start/End: Complemental strand, 21440 - 21389
Alignment:
| Q |
737 |
attttgaccattttgcagatttggtccttctattttaaaatttgacagtttt |
788 |
Q |
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||||| ||||||||||||| ||||||| ||||||||||||| ||||||||| |
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| T |
21440 |
attttcaccattttgcagaattggtccccctattttaaaattcgacagtttt |
21389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 738 - 789
Target Start/End: Original strand, 28587639 - 28587690
Alignment:
| Q |
738 |
ttttgaccattttgcagatttggtccttctattttaaaatttgacagttttc |
789 |
Q |
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|||| ||||||||||| ||||||||| ||||||||||||| |||||||||| |
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| T |
28587639 |
ttttcaccattttgcaaatttggtccccctattttaaaattcgacagttttc |
28587690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 737 - 788
Target Start/End: Complemental strand, 3577832 - 3577781
Alignment:
| Q |
737 |
attttgaccattttgcagatttggtccttctattttaaaatttgacagtttt |
788 |
Q |
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||||| ||||||||| ||| ||||||| ||||||||||||||||||||||| |
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| T |
3577832 |
attttcaccattttgaagaattggtccccctattttaaaatttgacagtttt |
3577781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 747 - 788
Target Start/End: Original strand, 14626234 - 14626275
Alignment:
| Q |
747 |
ttttgcagatttggtccttctattttaaaatttgacagtttt |
788 |
Q |
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| T |
14626234 |
ttttacagaattggtcctcctattttaaaatttgacagtttt |
14626275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 737 - 788
Target Start/End: Original strand, 12499037 - 12499088
Alignment:
| Q |
737 |
attttgaccattttgcagatttggtccttctattttaaaatttgacagtttt |
788 |
Q |
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||||| ||||||||||||| ||||||| ||||||||||||| ||||||||| |
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| T |
12499037 |
attttcaccattttgcagaattggtccccctattttaaaattcgacagtttt |
12499088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 743 - 788
Target Start/End: Complemental strand, 41650526 - 41650481
Alignment:
| Q |
743 |
accattttgcagatttggtccttctattttaaaatttgacagtttt |
788 |
Q |
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|||||||||| ||||| |||||||||||||||||| || ||||||| |
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| T |
41650526 |
accattttgcggatttagtccttctattttaaaatatgtcagtttt |
41650481 |
T |
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