View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0979-INSERTION-13 (Length: 1185)
Name: NF0979-INSERTION-13
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-13 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 541 - 1156
Target Start/End: Original strand, 49438075 - 49438702
Alignment:
| Q |
541 |
gatccctaaacttaacaaacctcatctagctcaaggttttcaagcttagggcaatgattgagcacttgcaccaacaaattccaattagagttgatagagt |
640 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49438075 |
gatccctaaacttaacaaacctcatctagctcaaggttttcaagcttagggcaatgattgagcacttgcaccaacaaattccaattagagttgatagagt |
49438174 |
T |
|
| Q |
641 |
gaagtttcaactcggtcagattatgaaaggtaggaatctcatcaaagcttcgatacatctaaaaacaagtaaacaacatagaaatatataccatca---- |
736 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49438175 |
gaagtttcaacttggtcagattatgaaaggtaggaatctcatcaaaacttcgatacatctaaaaacaagtaaacaacatagaaatatataccatcactca |
49438274 |
T |
|
| Q |
737 |
---gaaataaggtcaacattttcnnnnnnnnnnnnnnnnnnnnntcaacacatttcaccatcagtgtattcatatagcaataataaatttcaaaccttat |
833 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49438275 |
tcagaaataaggtcaacattttcaaaagaaaagcaaaaacaaaatcaacacatttcaccatcagtgtattcatatagcaataataaatttcaaaccttat |
49438374 |
T |
|
| Q |
834 |
ttagttctatgtgcagtttctccacattatgaagtgctttcaacggaaaatgacaataagtgtaaggcatttctgctttagtcaacttgcttaagcttaa |
933 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49438375 |
ttagttctatgtgcagtttctccacattatgaagtgctttcaacggaaaatgacaataagtgtaaggcatttctgctttagtcaacttgcttaagcttaa |
49438474 |
T |
|
| Q |
934 |
gg-ttcaccctcttgatgggtaaaagagtccttaagcgagaactttaaatgttctgtatgcaaatc-tcaagaattggacatccagccagaagcaacact |
1031 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
49438475 |
ggtttcaccctcttgatgggtaaaagagtccttaagcgagaactttaaatgttctgtatgcaaatcttcaagaattggacatccagccagaagcaacact |
49438574 |
T |
|
| Q |
1032 |
aaatctcgatcatttag-aatgaac-aagttctaagcgaaggatttggaggggaggggagtctaacagaagaaaaattcttcgca-taaatgaaaacagg |
1128 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||||||||||| | |
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| T |
49438575 |
aaatctcgatcatttagaaatgaacaaagttctaagcgaaggattttga-gggaggggagtctaacagaagaaaaatccttcgcattaaatgaaaacaag |
49438673 |
T |
|
| Q |
1129 |
tcg-gagccaccagggttttgcagttcaa |
1156 |
Q |
| |
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||| | | || ||||||||||||||||| |
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| T |
49438674 |
tcgagcacaacaagggttttgcagttcaa |
49438702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 8 - 465
Target Start/End: Original strand, 49437548 - 49438004
Alignment:
| Q |
8 |
gaaagttgtagacttaatttcggtaacaaacaagtttatnnnnnnntatgtctacaagtttacgggataatttttccttcacttgtgcaccaacacaaat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49437548 |
gaaagttgtagacttaatttcggtaacaaacaagtttataaaaaaa-atgtctacaagtttacgggataatttttccttcacttgtgcaccaacacaaat |
49437646 |
T |
|
| Q |
108 |
ttaatgacaatcaaggtttcgcattacaaaccaacaaacctagcagctgcatcataaaagcaaattaaagtgaactgtctggggagaacctatatgcatt |
207 |
Q |
| |
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|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49437647 |
ttcatgacaatcaaggtttcacattacaaaccaacaaacctagcagctgcatcataaaagcaaattaaagtgaactgtctggggagaacctatatgcatt |
49437746 |
T |
|
| Q |
208 |
tagtataacttcacatataggagagacccttgggcataaggataattctctttcaacttcgagagctttaacaccacagattgacattgtttgcaaaact |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49437747 |
tagtataacttcacatataggagagacccttgggcataaggataattctctttcaacttcgagagctttaacaccacagattgacattgtttgcaaaact |
49437846 |
T |
|
| Q |
308 |
cttgcattcttcagaatatatattgttgacataagctcaccctgttggcctatgaaattctgaaatatgcaagttttgaggtgtagtgaaaggcattgcg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49437847 |
cttgcattcttcagaatatatattgttgacataagctcaccctgttggcctatgaaattctgaaatatgcaagttttgaggtgtagtgaaaggcattgcg |
49437946 |
T |
|
| Q |
408 |
gaacaaattttgggtcctcccaatttttctggacatgtagtcttctatcaatagtcga |
465 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49437947 |
gaacaaattttgggtccttccaatttttctggacatgtagtcttctatcaatagtcga |
49438004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 800 - 903
Target Start/End: Complemental strand, 49415481 - 49415378
Alignment:
| Q |
800 |
tattcatatagcaataataaatttcaaaccttatttagttctatgtgcagtttctccacattatgaagtgctttcaacggaaaatgacaataagtgtaag |
899 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||| ||||| || ||||||||||||||||||||| |||||||||||| ||||| ||| |
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|
| T |
49415481 |
tattcatatagcaataataaatttcaaacctgatttatttctatgtacagttccttcacattatgaagtgctttcaatggaaaatgacaaaaagtggaag |
49415382 |
T |
|
| Q |
900 |
gcat |
903 |
Q |
| |
|
|||| |
|
|
| T |
49415381 |
gcat |
49415378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 577 - 749
Target Start/End: Original strand, 49426758 - 49426928
Alignment:
| Q |
577 |
ttttcaagcttagggcaatgattgagcacttgcaccaacaaattccaattagagttgatagagtgaagtttcaactcggtcagattatgaaaggtaggaa |
676 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| ||||||||| ||| |||||||| ||||||| |||| | |||| ||| ||||||||||||| |
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| T |
49426758 |
ttttgaaggttagggcaatgattgagcacttgtgccaacaaatgccagttagagtttatagagtaaagtgcaagggttgtcaaattgtgaaaggtaggaa |
49426857 |
T |
|
| Q |
677 |
tctcatcaaagcttcgatacatctaaaaacaagtaaacaacatagaaatatataccatcagaaataaggtcaa |
749 |
Q |
| |
|
|||||||| | | |||||||| || |||||| |||||||||| |||| |||||||| | |||||||||||| |
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|
| T |
49426858 |
tctcatcacaacctcgatacacct--aaacaaataaacaacatggaaaggtataccatgaaaaataaggtcaa |
49426928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 545 - 648
Target Start/End: Complemental strand, 43359814 - 43359711
Alignment:
| Q |
545 |
cctaaacttaacaaacctcatctagctcaaggttttcaagcttagggcaatgattgagcacttgcaccaacaaattccaattagagttgatagagtgaag |
644 |
Q |
| |
|
|||||||||||||||||| | ||||||| |||| ||| ||||||||| ||||||||||||| || |||||| ||||||| |||||||||||||||| |
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|
| T |
43359814 |
cctaaacttaacaaacctgactaagctcaacattttgaaggttagggcaaggattgagcacttgtactaacaaacgccaattatagttgatagagtgaag |
43359715 |
T |
|
| Q |
645 |
tttc |
648 |
Q |
| |
|
|||| |
|
|
| T |
43359714 |
tttc |
43359711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 296 - 434
Target Start/End: Original strand, 17641140 - 17641278
Alignment:
| Q |
296 |
gtttgcaaaactcttgcattcttcagaatatatattgttgacataagctcaccctgttggcctatgaaattctgaaatatgcaagttttgaggtgtagtg |
395 |
Q |
| |
|
|||||||||||| |||||||||||||||| | | ||| | | |||||| || | |||||||||||| || ||| | ||||| |||| ||||||| || |
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|
| T |
17641140 |
gtttgcaaaacttttgcattcttcagaatgtttcttgccaatagaagctcgccttcttggcctatgaagtttagaactttgcaaattttaaggtgtaatg |
17641239 |
T |
|
| Q |
396 |
aaaggcattgcggaacaaattttgggtcctcccaatttt |
434 |
Q |
| |
|
||| ||||||||||||||| |||||||| ||||||||| |
|
|
| T |
17641240 |
aaaaacattgcggaacaaatattgggtccacccaatttt |
17641278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 544 - 669
Target Start/End: Complemental strand, 49415840 - 49415715
Alignment:
| Q |
544 |
ccctaaacttaacaaacctcatctagctcaaggttttcaagcttagggcaatgattgagcacttgcaccaacaaattccaattagagttgatagagtgaa |
643 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||| ||| | ||||| || ||||||||||| ||||||||| |||||||||||| ||||||| || |
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|
| T |
49415840 |
ccctaaacttaacaaacctcactaagctcaacattttgaaggctggggcagtggttgagcacttgtgccaacaaatgccaattagagtttatagagtaaa |
49415741 |
T |
|
| Q |
644 |
gtttcaactcggtcagattatgaaag |
669 |
Q |
| |
|
|| ||| | ||||| |||||||||| |
|
|
| T |
49415740 |
gtcccaagttggtcaaattatgaaag |
49415715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 1002 - 1156
Target Start/End: Original strand, 49434702 - 49434859
Alignment:
| Q |
1002 |
agaattggacatccagccagaagcaacactaaatctcgatcatttag-aatgaac-aagttctaagcgaaggatttggaggggaggggagtctaacagaa |
1099 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||| | ||||||| || |||| ||||||||| |||||||| || ||||||| ||||||||||| |
|
|
| T |
49434702 |
agaattggacatccagccaaaagcaatactaaatctctagcatttagaaacgaacaaagttctaaataaaggattttga-gggagggaagtctaacagag |
49434800 |
T |
|
| Q |
1100 |
gaaaaattcttcgca-taaatgaaaacaggtcggag--ccaccagggttttgcagttcaa |
1156 |
Q |
| |
|
|||||| ||| || |||||||||||| || |||| |||| ||||||||||||||||| |
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|
| T |
49434801 |
gaaaaacctttcacattaaatgaaaacaagt-ggagctccacaagggttttgcagttcaa |
49434859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 43362474 - 43362425
Alignment:
| Q |
212 |
ataacttcacatataggagagacccttgggcataaggataattctctttc |
261 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
43362474 |
ataacttcacatgtaggagaggcccttggacataaggacaattctctttc |
43362425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 328
Target Start/End: Original strand, 49445332 - 49445374
Alignment:
| Q |
286 |
gattgacattgtttgcaaaactcttgcattcttcagaatatat |
328 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
49445332 |
gattgtcatggtttgcaaaactcttgcattcttcaaaatatat |
49445374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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