View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0979-INSERTION-17 (Length: 926)

Name: NF0979-INSERTION-17
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0979-INSERTION-17
NF0979-INSERTION-17
[»] chr8 (1 HSPs)
chr8 (8-923)||(41783561-41784476)


Alignment Details
Target: chr8 (Bit Score: 876; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 876; E-Value: 0
Query Start/End: Original strand, 8 - 923
Target Start/End: Complemental strand, 41784476 - 41783561
Alignment:
Q  8 acttgtgccatcaatattacaatgttggattttgcttgttcctcgctgttgttgagtttcatctccagatcagataccacaccttgtttctctttcaaca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41784476 acttgtgccatcaatattacaatgttggattttgcttgttcctcgctgttgttgagtttcatctccagatcagataccacaccttgtttctctttcaaca 41784377  T
Q  108 acgactcaagttccatgacatgattctgtagctcagtattttgtatgcttagttgtttaacttcatttgcttgactttcaatttgaagttctagattcgt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41784376 acgactcaagttccatgacatgattctgtagctcagtattttgtatgcttagttgtttaacttcatttgcttggctttcaatttgaagttctagattcgt 41784277  T
Q  208 tttatcgttgctcaagctcctcatctcttccattagtgaagttaattttctttcaatttcggttgcctcaactgatgcttcagtcttaagaacttgattg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41784276 tttatcgttgctcaagctcctcatctcttccattagtgaagttaattttctttcaatttcggttgcctcaactgatgcttcagtcttaagaacttgattg 41784177  T
Q  308 gtattgccaatattttggctaagatctgtcacctctctattatcacctgtatcagattcctgcttaacagtgtccgctactttttgttcttcctttgagg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41784176 gtattgccaatattttggctaagatctgtcacctctctattatcacctgtatcagattcctgcttaacagtgtccgctactttttgttcttcctttgagg 41784077  T
Q  408 aaaagtactccgagtctgagtcagatgaaaacattaaatcttttctttggttagaaaccactttcccaatgagattatcatattgtgcattgagtgactg 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  41784076 aaaagtactccgagtctgagtcagatgaaaacattaaatcttttctttggttagaaaccactttcccaatgagattatcatattgtgcattaagtgactg 41783977  T
Q  508 gtactgcttgtataagtcctccgttaatcccataagttctgtatcttttctagaacgtctagggctcgcatcttttttgctttggttttcgttcttaata 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41783976 gtactgcttgtataagtcctccgttaatcccataagttctgtatcttttctagaacgtctaggactcgcatcttttttgctttggttttcgttcttaata 41783877  T
Q  608 agcttctggatttttgtgatcttggtttcaatatctgcataaaatgggaaattttgatacatttacattaataaaatcccaaacatttcaaaattcagtt 707  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41783876 agcttctggatttttgtgatcttggtttcaatgcctgcataaaatgggaaattatgatacatttacattaataaaatcccaaacatttcaaaattcagtt 41783777  T
Q  708 agaaaaagctgtcaattgcaaagactacaaatataagtgttaagatttcttagttgcaacaatattagcaagaacatcaccgatggtgtagtccaccttg 807  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||    
T  41783776 agaaaaagctgtcaattgcaaagactacaaatataagtgttacgatttcttagttgcaacaatattagcaagaacatcactgatggtgtagtccgccttg 41783677  T
Q  808 gggtgtgctaaagtaggccttattataccgcattacctttaagcaactcacctccttttcacttcaatagtgcaaacactccaataggattccaaaagtt 907  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41783676 gggtgtgctaaagtaggccttattataccgcattacctttaagcaactcacctccttttcacttcaatagtgcaaacactccaatcggattccaaaagtt 41783577  T
Q  908 accacattttttcgca 923  Q
    ||||||||||||||||    
T  41783576 accacattttttcgca 41783561  T

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