View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0979-INSERTION-18 (Length: 960)
Name: NF0979-INSERTION-18
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-18 |
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Alignment Details
Target: chr1 (Bit Score: 799; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 799; E-Value: 0
Query Start/End: Original strand, 28 - 952
Target Start/End: Complemental strand, 41659928 - 41659001
Alignment:
| Q |
28 |
caatgccacactacttactaaaatcaatgtctaaatcaatcccacaatagtaagatcaaattgatattaggcggttttgaattatttatacaaatgggga |
127 |
Q |
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| T |
41659928 |
caatgccacactacttactaaaatcaatgtctaaatcaatgccacaatagtaagatcaaattgatattaggcggttttgaattatttatacaaatgggga |
41659829 |
T |
|
| Q |
128 |
aacccttggaagattgttaggtttttgacccatgacaatgttctcttttatttttcctaagaaaaccgctaaatctgactattttacaagcgtatc---- |
223 |
Q |
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| T |
41659828 |
aacccttggaagattgttaggtttttgacccatgacaatgttctcttttatttttcctaagaaaaccgctaaatctgactattttacaagcgtatcttag |
41659729 |
T |
|
| Q |
224 |
--------aggtcataaggtaggttttatttcagctagactttgaaatttagaaatttctttgaaagagtgagtg--ataattttgattttttgaagttg |
313 |
Q |
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| T |
41659728 |
agcatatcaagtcataaggtaggttttatttcagctagactttgaaatttagaaattcctttgaaagagtgagtgtgataattttgattttt-gaagttg |
41659630 |
T |
|
| Q |
314 |
aactctttattagtctttaacaccttaaagccttagacctttttatagtgattagttcaacattgtaacacaagtatccagttttgatagggataatcac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41659629 |
aactctttattagtctttaacaccttaaagccttagacctttttatagtgattagttcaacattgtaacacaagtatccagtcttgatagggataatcac |
41659530 |
T |
|
| Q |
414 |
tgtgctattatgacaatagtaggctatatcatttctacatctatactatactctgtagttttcaccttcagacctgagagatttatggtcatgtttattg |
513 |
Q |
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| T |
41659529 |
tgtgctattatgacaatagtaggctatatcatttctacatctatact-----ctgtagttttcaccttcagacttgagagatttatggccatgtttattg |
41659435 |
T |
|
| Q |
514 |
aattcttttgttcttctcaactcttcccgcttcttgttttcatgattttccaaatatttgattatgcgagattattattgaatcttggttatttttactt |
613 |
Q |
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| T |
41659434 |
aattcttttgttcttctcaacttttcccgcttcttgttttcatgattttccaaatatttgattatgcgagattattattgaatcttggttatttttactt |
41659335 |
T |
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| Q |
614 |
catattcaagtaaaataatacatagacttcaagaaatccatgaacactgaactgaaaaggttagtagttttagaaattaggttagtgtaccaatttggtt |
713 |
Q |
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| T |
41659334 |
catattcaagtaaaataatacatagacttcaagaaatccatgaacactgaa-----aaggttagtagttttagaatttaggttagtgtaccaatttggtt |
41659240 |
T |
|
| Q |
714 |
ttactaaactactttgtctttagtgtagtctatccatttggttttatgattcattagtaactatcttggttttattatgccaataaatctcacatttggc |
813 |
Q |
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| T |
41659239 |
ttactaaactactttgtctttagtgtagtctatccatttggttttatgattcatttgtaactatcttggttttattatgccaataaatctcacatttggc |
41659140 |
T |
|
| Q |
814 |
cctatatcttatattgagaattttgtgagaaatgacttaaatatttaaattgaaacaacaagaacaagtaattaaaactatagttgcactctgttttctc |
913 |
Q |
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| T |
41659139 |
cctatatcttatattgagaatcttgtgagaaatgacttaaatatttaaattgaaacaacaagaacaagtaattaaaactatagttgcactctgttttctc |
41659040 |
T |
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| Q |
914 |
ttcattgaaagtatttgaacgcaatttactaatctgttt |
952 |
Q |
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| T |
41659039 |
ttcattgaaagtatttgaacgcaatttactaatctgttt |
41659001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 754 - 946
Target Start/End: Complemental strand, 41657596 - 41657408
Alignment:
| Q |
754 |
gttttatgattcattagtaactatcttggttttattatgccaataaatctcacatttggccctatatcttatattgagaattttgtgagaaatgacttaa |
853 |
Q |
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| T |
41657596 |
gttttatgattcatt-gtaactatcttggttttaccatgccaagaaatctcgcagttgatcctatatcttatatcgagatgattgtgggaattgacttaa |
41657498 |
T |
|
| Q |
854 |
atatttaaattgaaacaacaagaacaagtaattaaaactatagttgcactctgttttctcttcattgaaagtatttgaacgcaatttactaat |
946 |
Q |
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| T |
41657497 |
at---taaatcgaaacaacaagagcaagtaattaaaattatagttgcactttgttttctctttatcgaaaatatttgaacgcaattttctaat |
41657408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 668 - 759
Target Start/End: Complemental strand, 41658309 - 41658216
Alignment:
| Q |
668 |
aaaaggttagtagttttagaaattaggttagtgtaccaatttggttttactaaactactt--tgtctttagtgtagtctatccatttggtttta |
759 |
Q |
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| T |
41658309 |
aaaaggttagtagattcagaaattaggttagtgtgccaatttggttgtactaaactacgtcaagtctttagtgtagtctatccatttggattta |
41658216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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