View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0979-INSERTION-20 (Length: 850)
Name: NF0979-INSERTION-20
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-20 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 470 - 829
Target Start/End: Original strand, 6752677 - 6753036
Alignment:
| Q |
470 |
ataattcaggaaatacaaatgaatatgcggtcaaatttcgacaaatggggggcggaatgaccttacatgtcgatactaaacaagtgtgtttgattctgcc |
569 |
Q |
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| T |
6752677 |
ataattcaggaaatacaaatgaatatgcggtcaaatttcgacaaatggggggggggatgaccttacacgtcgatactaaacaagtgtgtttgattctgcc |
6752776 |
T |
|
| Q |
570 |
tagacaaatatagaatctgaatgaattgattctgattaaaagtaagtcgaatgtatagtaatttatgttcacacgttcatataaaggcgggctggttgaa |
669 |
Q |
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|||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
6752777 |
tagacaaatatagattttgaatgaattgattctggttaaaagtaagtcgaatgtatagtaatttatgttcacacgttcatataaaggcaggttggttgaa |
6752876 |
T |
|
| Q |
670 |
cgtaaatttgaggctgatttaatttgcagagccaaaaactccgaattctacccgatttagaatcaattttggaggtaccagagaacatccaaacatgtca |
769 |
Q |
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| T |
6752877 |
cgtaaatttgaggctaatttaatttgcagagccaaaaactccgaattctacccgatttagaatcaattttggaggtaccagagaacatccaaacatgtca |
6752976 |
T |
|
| Q |
770 |
gtttaacatctcctatcaaactaaaaattcaacaatttggttggtaaataatatcaacaa |
829 |
Q |
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| T |
6752977 |
gtttaacatctcctatcaaactaaaaattcaacaatttggttggtaaataatatcaacaa |
6753036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 39 - 304
Target Start/End: Original strand, 6761681 - 6761945
Alignment:
| Q |
39 |
attctaatacatttgagaaaaagccaggttaatttaagtcatatgccaagattaggaggcagagcatgagcaaatttgatgccatacgagcctaaaaccg |
138 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||| |||||||||| |||||||| | |||||||||| ||||||| |
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| T |
6761681 |
attctaatacatttgagaaaaggccaggataatttaagtcatatgccaagattaagagacagagcatgattaaatttgaagacatacgagcc-aaaaccg |
6761779 |
T |
|
| Q |
139 |
taccttcgacactggagtgatagataccaagaccggcccaatacacataaccattcatgggtaccaagtcatacacattaagataaactggagtttttcc |
238 |
Q |
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| T |
6761780 |
taccttcgacaccagagtgatagataccaagaccggcccaatacacgtaaccattcatgggtgtcaagtcatacacattaagataaactggagtttttcc |
6761879 |
T |
|
| Q |
239 |
aggttcatggctagctgaatttactttgcgaaatagcgataaacaagtcaccggcgattttccttt |
304 |
Q |
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|||| |||||||||||||||||||||||||||||| || |||| ||||||||| ||||||||||| |
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| T |
6761880 |
aggtccatggctagctgaatttactttgcgaaataaagaaaaacgagtcaccggtgattttccttt |
6761945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 299 - 719
Target Start/End: Original strand, 6761973 - 6762408
Alignment:
| Q |
299 |
tcctttcttggagttcaatttcatctttccctaaggtga-cactcgcatagtacctgcattcaacaaatgtttga--tagagcatcgcctatttataatg |
395 |
Q |
| |
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||||||||| || ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||||| ||| |
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| T |
6761973 |
tcctttcttagacttcaatttcatctttccctaaggcgaacactcacatagtacctgcattcaacaaatgtttgagttagaggatcacctatttattatg |
6762072 |
T |
|
| Q |
396 |
ttca-cattctcagtcattnnnnnnnnnnnntttgttttgtataaaacaattagcagaaacttccttcttatgagataattcaggaaatacaaatgaata |
494 |
Q |
| |
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|||| |||| ||| ||||| || || |||||||| |||||||||||||||||||||||||| | |||||||||||||||||||| | |
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| T |
6762073 |
ttcaacattttcactcattaaaaataaataacttacttggtataaaataattagcagaaacttccttcttatga--tgattcaggaaatacaaatgaaga |
6762170 |
T |
|
| Q |
495 |
tgcggtcaaatttcgacaaatg--------------gggggcggaatgaccttacatgtcgatactaaacaagtgtgtttgattctgcctagacaaatat |
580 |
Q |
| |
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||| |||||||||||||||||| |||| | || |||||||||||||||||||||| ||| ||||||||||||| ||||||||| |
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| T |
6762171 |
tgcagtcaaatttcgacaaatgaactatttttaaggggggaagaaaagaccttacatgtcgatactaaaaaagcctgtttgattctgcgatgacaaatat |
6762270 |
T |
|
| Q |
581 |
a--gaatctgaatgaattgattctgattaaaagtaagtcgaatgtatagtaatttatgttcacacgttcatataaaggcgggctggttgaacgtaaattt |
678 |
Q |
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| || | ||||||||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||||||||||| | ||| ||||||||| ||||||| |
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| T |
6762271 |
atagattttgaatgaattgattctggttaaat-taagttgaatgtatagtaatttatgtttacacgttcatataaaagtgggttggttgaacataaattt |
6762369 |
T |
|
| Q |
679 |
gaggctgatttaatttgcagagccaaaaactccgaattcta |
719 |
Q |
| |
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||| || | |||||||| || |||||||||| ||||||||| |
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| T |
6762370 |
gagactaaattaatttgtag-gccaaaaact-cgaattcta |
6762408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 270 - 413
Target Start/End: Original strand, 6752502 - 6752643
Alignment:
| Q |
270 |
aatagcgataaacaagtcaccggcgattttcctttcttggagttcaatttcatctttccctaaggtgacactcgcatagtacctgcattcaacaaatgtt |
369 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
6752502 |
aatagcgataaacaagtcaccggtgattttcctttctt--agttcaatttcatctttccctaaggtgacactcacatagtacttgcattcaacaaatgtt |
6752599 |
T |
|
| Q |
370 |
tgatagagcatcgcctatttataatgttcacattctcagtcatt |
413 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6752600 |
tgatagagcatcacctatttataatgttcacattctcagtcatt |
6752643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 592 - 638
Target Start/End: Complemental strand, 36779487 - 36779441
Alignment:
| Q |
592 |
gaattgattctgattaaaagtaagtcgaatgtatagtaatttatgtt |
638 |
Q |
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||||||||| ||||||||||| ||| ||||||| ||||||||||||| |
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| T |
36779487 |
gaattgattttgattaaaagtgagttgaatgtaaagtaatttatgtt |
36779441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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