View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0979-INSERTION-21 (Length: 820)
Name: NF0979-INSERTION-21
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-21 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 8 - 560
Target Start/End: Complemental strand, 56277792 - 56277231
Alignment:
| Q |
8 |
atcatgatacttctgaatgcgtttcacccttaccaatttgaatttgaatttggaagggtcaaaatcaaaa------------gcaagagctatgctatca |
95 |
Q |
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| T |
56277792 |
atcatgatacttctgaatgcgtttcacccttaccaatttgaatttg------gaagggtcaaaatcaaaatcaaaatcaaaagcaagagctatgctatca |
56277699 |
T |
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| Q |
96 |
gtaatgtgacattgaggagggcagttgaattgaatccagtctttgtttgaaggattacagagatagatggttggatttggggaaggaaaacaggtacggc |
195 |
Q |
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| T |
56277698 |
gttatgtcacattgaggagggcagttgaattgaataaagtctttgtttgaaggattgcagagatagatggttggatttggggaaggaaaacaggtacggc |
56277599 |
T |
|
| Q |
196 |
agcaaagaattcctttacaagatgacaaaagcacaacatcttgaggaagaaaagaaaaaacattgtggtgaacaactagtttagcagcgtt---tttggg |
292 |
Q |
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| T |
56277598 |
agcaaacaattcctttacaggaagccaaaacaacaacatcttgaggaagaaaagaaaaaacattgtggtgaacaactagtttagcagcgttgtttttggg |
56277499 |
T |
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| Q |
293 |
ttggacaggaatgtaactaatggttttaacatcgtgtttgcagaacatgtacctatcttgaacaataaaagcatttaaaacaagattagtgtttttgagt |
392 |
Q |
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| T |
56277498 |
ttccacaggaatgtaactaatggttttaacatcgtgtttgcagaacatgtacctatcttgaacaataaaaccatttaaaacaagatttgtgtttttgagt |
56277399 |
T |
|
| Q |
393 |
tgatctttgatgaatgaacggcttgaaatgatgttgttccaccctctggaaatgcatttcatgctaagcaaaggcttggccggaacgcgtgtgagaatat |
492 |
Q |
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| T |
56277398 |
tgatctttgatgaatgaacggcttgaaatgatgtggttccaacctctggaaatgcatttcatgctaagcaaaggtttggccggaacgcgtgtgagaatat |
56277299 |
T |
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| Q |
493 |
gagagattacgtctctgttcagagacccctcctcaatctcatcattctcaaccttaagcaacttcttc |
560 |
Q |
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| T |
56277298 |
gagagatgacgtctctgttgagagaaccctcctcactctcatcactatcaaccttaagaatcttcttc |
56277231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 768 - 820
Target Start/End: Complemental strand, 56276943 - 56276892
Alignment:
| Q |
768 |
accaatcactccttgtctagtttcatttttaaaaattttaatttgttgtgatt |
820 |
Q |
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| T |
56276943 |
accaatcactccttgtctagtttga-ttttaaaaaatttaatttgttgtgatt |
56276892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 646 - 680
Target Start/End: Complemental strand, 56277079 - 56277045
Alignment:
| Q |
646 |
tatgtaacaaactcatacacagtgcgttgtgtgtg |
680 |
Q |
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| T |
56277079 |
tatgtaacaaactcatacacggtgcgttgtgtgtg |
56277045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 708
Target Start/End: Complemental strand, 56277024 - 56276995
Alignment:
| Q |
679 |
tgccgttttggcataactagaaacaaatac |
708 |
Q |
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| T |
56277024 |
tgccgttttggcataactagaaacaaatac |
56276995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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