View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0979-INSERTION-22 (Length: 887)
Name: NF0979-INSERTION-22
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-22 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 571; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 286 - 887
Target Start/End: Original strand, 14946065 - 14946667
Alignment:
| Q |
286 |
atcaaatttattgcttataaaaataaaaagaaatcacttcatattgataatttgcatcttttaggctatgctctttgcaggatcaaactcaacagctgta |
385 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14946065 |
atcaaatttattgcttataaaagtaaaaagaaatcacttcatattgataatttgcatcttttaggctatgctctttgcaggatcaaactcaacagctgta |
14946164 |
T |
|
| Q |
386 |
actttagaatgggcaatgtctaatttattaaaccatccagaagtgttgaaaaaagcaaaagaggaaatggacacttatataggacaagaccatttgttaa |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14946165 |
actttagaatgggcaatgtctaatttattaaaccatccagaagtgttgaaaaaagcaaaagaggaaatggacacttatataggacaagaccatttgttaa |
14946264 |
T |
|
| Q |
486 |
atgaggttgaccttccaaaacttccttaccttaagaaggtcgtcttagagacacttaggatgtaccctccagctccattgctatttccacacttgtcttc |
585 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14946265 |
atgaggttgaccttccaaaacttccttaccttaagaaggtcgtcctagagacacttaggatgtaccctccagctccattgctatttccacacttgtcttc |
14946364 |
T |
|
| Q |
586 |
agatgacattgttatggaaggattcaatgttccacgtgacactattgtgcttactaatggttggtcaaggcaaagggaccctttggtgtggaatgaaccc |
685 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14946365 |
agatgacattgttatggaaggattcaatgttccacgtgacactattgtgcttactaatggttggtcaatgcaaagggaccctttggtgtggaatgaaccc |
14946464 |
T |
|
| Q |
686 |
acacattttatacctgagaggtttgataaagaaagagaggagaaaaagttggttgtttttgggtttggaagaaggtcttgtccaggaaaggccatggctt |
785 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14946465 |
acacattttatacctgagaggtttgataaagaaggagaggagaagaagttggttgtttttgggtttggaagaaggtcttgtccaggaaaggccatggctt |
14946564 |
T |
|
| Q |
786 |
tgcataatgtttcctttattttgggattattgattcaatgctttgattggaaacgagtgagtgaagc-aagattgatatgagtgatcaaaatttgttcac |
884 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14946565 |
tgcataacgtttcctttattttgggattattgattcaatgctttgattggaaacgagtgagtgaagcaaagattgatatgagtgatcaaaatttgttcac |
14946664 |
T |
|
| Q |
885 |
ctc |
887 |
Q |
| |
|
||| |
|
|
| T |
14946665 |
ctc |
14946667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 14945993 - 14946058
Alignment:
| Q |
190 |
ctttcttcctacgatatatttgtagagtaaattgtctgactaaaaatagtagttaaatttgaagtt |
255 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14945993 |
ctttcttcctaagatatatttgtagagacaattgtctgactaaaaatagtagttaaatttgaagtt |
14946058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 493 - 772
Target Start/End: Complemental strand, 38975042 - 38974763
Alignment:
| Q |
493 |
tgaccttccaaaacttccttaccttaagaaggtcgtcttagagacacttaggatgtaccctccagctccattgctatttccacacttgtcttcagatgac |
592 |
Q |
| |
|
|||||| |||||||| ||||||||||| || || ||| |||||||||||| ||||| |||| ||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
38975042 |
tgacctaccaaaactcccttaccttaaaaatatcatctatgagacacttaggttgtacactcctgctccattgtcattgccacactcttcttcagatgag |
38974943 |
T |
|
| Q |
593 |
attgttatggaaggattcaatgttccacgtgacactattgtgcttactaatggttggtcaaggcaaagggaccctttggtgtggaatgaacccacacatt |
692 |
Q |
| |
|
| |||| | ||| | ||| |||||||| |||||||| ||||| ||||| |||| | | || || |||||| | |||| |||| ||||| || |
|
|
| T |
38974942 |
tgtattattggagggtacaaagttccacgagacactatattgcttgttaatgcttgggccattcatagagaccctaagagttggagtgaagccacaagtt |
38974843 |
T |
|
| Q |
693 |
ttatacctgagaggtttgataaagaaagagaggagaaaaagttggttgtttttgggtttggaagaaggtcttgtccagga |
772 |
Q |
| |
|
| | |||||||||||||| |||||| ||||| | |||||| ||| |||||||| ||||||||| ||||||||||| |
|
|
| T |
38974842 |
tcaagcctgagaggtttgagaaagaaggagagttagacaagttgattgcatttgggttaggaagaagggcttgtccagga |
38974763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 805 - 838
Target Start/End: Complemental strand, 38974730 - 38974697
Alignment:
| Q |
805 |
tttgggattattgattcaatgctttgattggaaa |
838 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
38974730 |
tttgggtttattgattcaatgctttgattggaaa |
38974697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 426
Target Start/End: Original strand, 5893678 - 5893715
Alignment:
| Q |
389 |
ttagaatgggcaatgtctaatttattaaaccatccaga |
426 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
5893678 |
ttagaatgggctatgtctaatttgttaaaccatccaga |
5893715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University