View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0979-INSERTION-23 (Length: 755)

Name: NF0979-INSERTION-23
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0979-INSERTION-23
NF0979-INSERTION-23
[»] chr6 (7 HSPs)
chr6 (419-646)||(4030138-4030376)
chr6 (419-600)||(28928392-28928584)
chr6 (434-644)||(4030765-4030985)
chr6 (434-639)||(24546968-24547183)
chr6 (459-596)||(28931040-28931189)
chr6 (250-340)||(4030455-4030544)
chr6 (159-213)||(4030588-4030642)
[»] chr2 (5 HSPs)
chr2 (643-755)||(25328021-25328134)
chr2 (520-599)||(18342777-18342856)
chr2 (502-646)||(18343871-18344015)
chr2 (612-648)||(42027182-42027218)
chr2 (520-595)||(15269091-15269166)
[»] chr3 (16 HSPs)
chr3 (419-644)||(29821310-29821544)
chr3 (434-639)||(29822657-29822873)
chr3 (502-599)||(33149520-33149617)
chr3 (250-340)||(29821610-29821700)
chr3 (159-212)||(29821745-29821798)
chr3 (511-600)||(9776893-9776982)
chr3 (520-599)||(9769504-9769583)
chr3 (502-600)||(33150661-33150760)
chr3 (8-80)||(17569481-17569554)
chr3 (512-595)||(382962-383045)
chr3 (608-647)||(5411325-5411364)
chr3 (608-644)||(31638109-31638145)
chr3 (452-501)||(2124176-2124225)
chr3 (452-501)||(10986778-10986827)
chr3 (452-501)||(41386277-41386326)
chr3 (452-501)||(42633806-42633855)
[»] chr4 (7 HSPs)
chr4 (502-596)||(53757964-53758057)
chr4 (285-350)||(53757668-53757733)
chr4 (427-552)||(53757460-53757596)
chr4 (608-642)||(21570510-21570544)
chr4 (502-600)||(47606581-47606679)
chr4 (609-642)||(27410769-27410802)
chr4 (612-645)||(33376210-33376243)
[»] chr5 (3 HSPs)
chr5 (504-598)||(11431448-11431542)
chr5 (612-645)||(24805283-24805316)
chr5 (452-501)||(26403454-26403503)
[»] scaffold0012 (2 HSPs)
scaffold0012 (504-600)||(242481-242577)
scaffold0012 (505-599)||(243572-243666)
[»] chr1 (3 HSPs)
chr1 (551-600)||(6710819-6710868)
chr1 (512-599)||(6709706-6709793)
chr1 (556-653)||(51219001-51219098)
[»] chr8 (4 HSPs)
chr8 (542-646)||(13513411-13513515)
chr8 (542-646)||(13602944-13603048)
chr8 (612-645)||(37977-38010)
chr8 (612-645)||(43275742-43275775)


Alignment Details
Target: chr6 (Bit Score: 104; Significance: 2e-51; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 419 - 646
Target Start/End: Complemental strand, 4030376 - 4030138
Alignment:
Q  419 attatcaaatgttgcgagtccattgtagactagtgtgtgttttttaaatccaaccattgattattaatcttaagtgacatgtg-----------cggttt 507  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||| ||| |||||||||| |||           | ||||    
T  4030376 attatcaaatgttgcaagtccattgtagactagtgtgtgctttttaaatccatccattgattatcaattttaagtgacacgtggcaagagttaacagttt 4030277  T
Q  508 taacaaaaaagctaacagagaggattaaattgattaacagaagtaaaaataaaggatcaaattgagacgttttaaagttatgggaccattttgnnnnnnn 607  Q
    ||||||||||  |||  ||||||| ||| |||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||           
T  4030276 taacaaaaaacttaatggagaggactaacttgattaacagaggtaaaaataaatgaccaaattgagacgttttaaagttatgggaccattttgaaaaaag 4030177  T
Q  608 gaattaagttaagagaccaaacgatgtattaagcctaaa 646  Q
    ||||||| ||||  |||||||||||||||||||||||||    
T  4030176 gaattaaattaaaggaccaaacgatgtattaagcctaaa 4030138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 419 - 600
Target Start/End: Complemental strand, 28928584 - 28928392
Alignment:
Q  419 attatcaaatgttgcgagtccattgtagactagtgtgtgttttttaaatccaaccattgattattaatcttaagtgacatgtg-----------cggttt 507  Q
    ||||| |||||||| || | ||||||||||||||||||| |||||| |||||||| |||||||| |||||||||||| |||||           ||||||    
T  28928584 attataaaatgttgagatttcattgtagactagtgtgtgctttttagatccaacccttgattatcaatcttaagtgatatgtggcaagacttaacggttt 28928485  T
Q  508 taacaaaaaagctaacagagaggattaaattgattaacagaagtaaaaataaaggatcaaattgagacgttttaaagttatgggaccattttg 600  Q
    ||||||||||||||||  | |||| ||| |||||||||||||||| |||||| ||| |||||||||||||||||||||||| |||||||||||    
T  28928484 taacaaaaaagctaacgaaaaggactaacttgattaacagaagtagaaataagggaccaaattgagacgttttaaagttataggaccattttg 28928392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 434 - 644
Target Start/End: Original strand, 4030765 - 4030985
Alignment:
Q  434 gagtccattgtagactagtgtgtgttttttaaatccaaccattgattattaatcttaagtgacatgtg-----------cggttttaacaaaaaagctaa 522  Q
    |||||||||||| | | ||| ||| |||||||||||||||||| || || ||||||||||||||||||           ||||||||||||||||| |||    
T  4030765 gagtccattgtatatttgtgagtgctttttaaatccaaccattcataatcaatcttaagtgacatgtggtaagagttaacggttttaacaaaaaagttaa 4030864  T
Q  523 cagagaggattaaattgattaacagaagtaaaaataaaggatcaaattgagacgttttaaagttatgggaccattttgnnnnnnngaattaagttaagag 622  Q
    | ||||||| ||| |||||||||||||||| |||||| ||| ||||||||||||||||||||||||| ||||||||||       ||||||| ||||| |    
T  4030865 cggagaggactaatttgattaacagaagtataaataagggaccaaattgagacgttttaaagttatgagaccattttg-aaaaaagaattaaattaaggg 4030963  T
Q  623 accaaacgatgtattaagccta 644  Q
    |||||||||||||| |||||||    
T  4030964 accaaacgatgtatcaagccta 4030985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 434 - 639
Target Start/End: Original strand, 24546968 - 24547183
Alignment:
Q  434 gagtccattgtagactagtgtgtgttttttaaatccaaccattgattattaatcttaagtgacatgtg-----------cggttttaacaaaaaagctaa 522  Q
    |||||||||||| | | ||| ||| || ||||||||||||||||||||| ||||||||||||||||||           ||||||| ||||||||| |||    
T  24546968 gagtccattgtatatttgtgagtgcttattaaatccaaccattgattatcaatcttaagtgacatgtggcaacagttaacggttttgacaaaaaagttaa 24547067  T
Q  523 cagagaggattaaattgattaacagaagtaaaaataaaggatcaaattgagacgttttaaagttatgggaccattttgnnnnnnngaattaagttaagag 622  Q
    | ||||||| ||| |||||||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||||||||       ||||||||||||| |    
T  24547068 cggagaggactaatttgattaaca-aagtataaataagggatcaaattgagacgttttaaagttatgagaccattttgaaaaaaagaattaagttaaggg 24547166  T
Q  623 accaaacgatgtattaa 639  Q
    |||||| ||||||||||    
T  24547167 accaaatgatgtattaa 24547183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 459 - 596
Target Start/End: Original strand, 28931040 - 28931189
Alignment:
Q  459 tttttaaatccaaccattgattattaatcttaagtgacatgtg-----------cggttttaacaaaa-aagctaacagagaggattaaattgattaaca 546  Q
    ||||||||||||||| ||||| || ||||||||||||||||||           |||||||||||||| |||||||| ||||||| ||| |||||||||     
T  28931040 tttttaaatccaacccttgatcatcaatcttaagtgacatgtggcaagagttggcggttttaacaaaaaaagctaacggagaggactaagttgattaacg 28931139  T
Q  547 gaagtaaaaataaaggatcaaattgagacgttttaaagttatgggaccat 596  Q
    |||||| |||||| ||| |||||||||||||||||||||||| |||||||    
T  28931140 gaagtagaaataagggaccaaattgagacgttttaaagttataggaccat 28931189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 250 - 340
Target Start/End: Complemental strand, 4030544 - 4030455
Alignment:
Q  250 cccagaaatagtaaagtaatgatgcatattaaatgttaaagagaaaatatgtgaggcaatagcagactgcggtgtgtctttttgcaaatat 340  Q
    |||| |||||||||  ||||||||||| || ||||||||||||||||||||||||| ||||||||| || |||||||||||||||| ||||    
T  4030544 cccaaaaatagtaagataatgatgcatgttgaatgttaaagagaaaatatgtgagggaatagcagattg-ggtgtgtctttttgcagatat 4030455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 4030642 - 4030588
Alignment:
Q  159 attagaatcttcatcaatcatggtttatctcttccatattcatcaatttcaacaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4030642 attagaatcttcatcaatcatggtttatctcttccatattcatcaatctcaacaa 4030588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 7e-48; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 643 - 755
Target Start/End: Original strand, 25328021 - 25328134
Alignment:
Q  643 taaagtaaatttgtgactttcaatccctgtcatcca-ctacaatcatctattaatgccatcctataaaagaagaaaaaacattggaatacattttctttc 741  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25328021 taaagtaaatttgtgactttcaatccctgtcattcaactacaatcatctattaatgccatcctataaaagaagaaaaaacataggaatacattttctttc 25328120  T
Q  742 catcatgtgcaaat 755  Q
    ||||||||||||||    
T  25328121 catcatgtgcaaat 25328134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 520 - 599
Target Start/End: Complemental strand, 18342856 - 18342777
Alignment:
Q  520 taacagagaggattaaattgattaacagaagtaaaaataaaggatcaaattgagacgttttaaagttatgggaccatttt 599  Q
    |||| ||||||| ||| ||||||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||||    
T  18342856 taacggagaggactaacttgattaacggaactagaaataaaggaccaaattgagacgttttaaagttatgggaccatttt 18342777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 502 - 646
Target Start/End: Original strand, 18343871 - 18344015
Alignment:
Q  502 cggttttaacaaaaaagctaacagagaggattaaattgattaacagaagtaaaaataaaggatcaaattgagacgttttaaagttatgggaccattttgn 601  Q
    |||||||| ||||||| ||||| ||||||| |||||||| | || || ||  |||||| ||| |||||||||||||||||||| ||| |||||||||||     
T  18343871 cggttttagcaaaaaaactaacggagaggactaaattgactgacggatgtggaaataagggaccaaattgagacgttttaaagctattggaccattttga 18343970  T
Q  602 nnnnnngaattaagttaagagaccaaacgatgtattaagcctaaa 646  Q
          ||||||||||||| ||||  | |||  ||||||||||||    
T  18343971 aaaaaagaattaagttaagggaccggaggattaattaagcctaaa 18344015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 612 - 648
Target Start/End: Complemental strand, 42027218 - 42027182
Alignment:
Q  612 taagttaagagaccaaacgatgtattaagcctaaagt 648  Q
    ||||||||| |||||||||||||||||||||||||||    
T  42027218 taagttaagggaccaaacgatgtattaagcctaaagt 42027182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 595
Target Start/End: Original strand, 15269091 - 15269166
Alignment:
Q  520 taacagagaggattaaattgattaacagaagtaaaaataaaggatcaaattgagacgttttaaagttatgggacca 595  Q
    |||| ||||||| ||| |||||| || |||||| | |||| ||| ||||||||||||||||| |||||| ||||||    
T  15269091 taacggagaggactaacttgattgacggaagtatagataagggaccaaattgagacgttttatagttattggacca 15269166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 4e-46; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 419 - 644
Target Start/End: Complemental strand, 29821544 - 29821310
Alignment:
Q  419 attatcaaatgttgcgagtccattgtagactagtgtgtgttttttaaatccaaccattgattattaatcttaagtgacatgtg-----------cggttt 507  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||| |||||||||||||| ||            ||||||    
T  29821544 attatcaaatgttgcgagtccattgtagactagtgtgtgctttttaaatctaatcattgattatcaatcttaagtgacacgtagcaagagttaacggttt 29821445  T
Q  508 taacaaaaaagctaacagagaggattaaattgattaacagaagtaaaaataaaggatcaaattgagacgttttaaagttatgggaccattttgnnnnnnn 607  Q
    ||||||||||  |||| ||||||| ||| |||||||| ||  |||||||||||||| ||||||||||||||||||||||||||||||||||||           
T  29821444 taacaaaaaacttaacggagaggactaacttgattaagag--gtaaaaataaaggaccaaattgagacgttttaaagttatgggaccattttgaaaaaaa 29821347  T
Q  608 gaattaagttaagagaccaaacgatgtattaagccta 644  Q
    ||||||| ||||| |||||||| | ||||||| ||||    
T  29821346 gaattaaattaagggaccaaaccacgtattaaaccta 29821310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 434 - 639
Target Start/End: Original strand, 29822657 - 29822873
Alignment:
Q  434 gagtccattgtagactagtgtgtgttttttaaatccaaccattgattattaatcttaagtgacatgtg-----------cggttttaacaaaaaagctaa 522  Q
    ||||| |||||| | | ||| ||| |||||||||||||||||| || || ||||||||||||||||||           ||||||||||||||||| |||    
T  29822657 gagtctattgtatatttgtgagtgctttttaaatccaaccattcataatcaatcttaagtgacatgtggcaagagttaacggttttaacaaaaaagttaa 29822756  T
Q  523 cagagaggattaaattgattaacagaagtaaaaataaaggatcaaattgagacgttttaaagttatgggaccattttgnnnnnnngaattaagttaagag 622  Q
    | ||||||| ||| |||||||||||||||| |||||| ||| ||||||||||| ||||||| ||||||||||||| ||       ||||||| ||||| |    
T  29822757 cggagaggactaatttgattaacagaagtataaataagggaccaaattgagactttttaaaattatgggaccattctgaaaaaaagaattaaattaaggg 29822856  T
Q  623 accaaacgatgtattaa 639  Q
    ||||||| || ||||||    
T  29822857 accaaacaatatattaa 29822873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 502 - 599
Target Start/End: Complemental strand, 33149617 - 33149520
Alignment:
Q  502 cggttttaacaaaaaagctaacagagaggattaaattgattaacagaagtaaaaataaaggatcaaattgagacgttttaaagttatgggaccatttt 599  Q
    |||||||||||||||| ||||| ||||||| ||| ||||||||| |||||| | |||| ||| |||||||||||||||||||||||||||||||||||    
T  33149617 cggttttaacaaaaaaactaacggagaggactaacttgattaacggaagtagagataatggaccaaattgagacgttttaaagttatgggaccatttt 33149520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 250 - 340
Target Start/End: Complemental strand, 29821700 - 29821610
Alignment:
Q  250 cccagaaatagtaaagtaatgatgcatattaaatgttaaagagaaaatatgtgaggcaatagcagactgcggtgtgtctttttgcaaatat 340  Q
    ||||||||||||||  ||||||||||| || ||||||||||||||||||||||||| ||||||||| || |||||||||||||||| ||||    
T  29821700 cccagaaatagtaagataatgatgcatgttgaatgttaaagagaaaatatgtgagggaatagcagattggggtgtgtctttttgcagatat 29821610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 29821798 - 29821745
Alignment:
Q  159 attagaatcttcatcaatcatggtttatctcttccatattcatcaatttcaaca 212  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  29821798 attagaatcttcaccaatcatggtttatctcttccatattcatcaatctcaaca 29821745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 511 - 600
Target Start/End: Complemental strand, 9776982 - 9776893
Alignment:
Q  511 caaaaaagctaacagagaggattaaattgattaacagaagtaaaaataaaggatcaaattgagacgttttaaagttatgggaccattttg 600  Q
    ||||||| |||||| |||||| ||| |||||| ||||||||| | |||| ||| |||||||||||||||| |||||||| ||| ||||||    
T  9776982 caaaaaaactaacacagaggactaacttgattgacagaagtagagataagggaccaaattgagacgttttcaagttatgtgactattttg 9776893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 520 - 599
Target Start/End: Original strand, 9769504 - 9769583
Alignment:
Q  520 taacagagaggattaaattgattaacagaagtaaaaataaaggatcaaattgagacgttttaaagttatgggaccatttt 599  Q
    |||| ||||||| ||| |||||| || |||||| |  ||| |||||||||| ||||||||||||||||||||||||||||    
T  9769504 taacggagaggactaacttgattgactgaagtagagttaagggatcaaattaagacgttttaaagttatgggaccatttt 9769583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 502 - 600
Target Start/End: Original strand, 33150661 - 33150760
Alignment:
Q  502 cggttttaacaaaaaag-ctaacagagaggattaaattgattaacagaagtaaaaataaaggatcaaattgagacgttttaaagttatgggaccattttg 600  Q
    ||||||||||||||||  ||||| |||||||  || ||| || ||||||||| | |||| ||||||||||| |||||||||||| |||| ||||||||||    
T  33150661 cggttttaacaaaaaaaactaacggagaggacgaacttggttgacagaagtagatataagggatcaaattgggacgttttaaagctatgagaccattttg 33150760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 17569554 - 17569481
Alignment:
Q  8 aaagcaacattgactgaatgacaattgcagagagatcaaa-cacaacttactaatgccaaagatccagaagcta 80  Q
    |||||| ||||||||||||||| |||||| ||||| |||| ||||| ||||||| ||||||||||| |||||||    
T  17569554 aaagcagcattgactgaatgactattgcaaagagaacaaaacacaaattactaaagccaaagatccggaagcta 17569481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 512 - 595
Target Start/End: Original strand, 382962 - 383045
Alignment:
Q  512 aaaaaagctaacagagaggattaaattgattaacagaagtaaaaataaaggatcaaattgagacgttttaaagttatgggacca 595  Q
    |||||| ||||| ||||||| ||| |||||| || |||||| | |||| ||| |||||||||| |||||| |||||||||||||    
T  382962 aaaaaaactaacggagaggactaacttgattgacggaagtagagataagggaccaaattgagatgttttatagttatgggacca 383045  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 608 - 647
Target Start/End: Original strand, 5411325 - 5411364
Alignment:
Q  608 gaattaagttaagagaccaaacgatgtattaagcctaaag 647  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  5411325 gaattaagttaagggaccaaacgatgtattaagcctaaag 5411364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 608 - 644
Target Start/End: Complemental strand, 31638145 - 31638109
Alignment:
Q  608 gaattaagttaagagaccaaacgatgtattaagccta 644  Q
    ||||||||||||| |||||||||||||||||||||||    
T  31638145 gaattaagttaagggaccaaacgatgtattaagccta 31638109  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 501
Target Start/End: Complemental strand, 2124225 - 2124176
Alignment:
Q  452 tgtgtgttttttaaatccaaccattgattattaatcttaagtgacatgtg 501  Q
    |||||| ||||||||||||||| ||||| | ||||||||| |||||||||    
T  2124225 tgtgtgctttttaaatccaaccgttgatcactaatcttaaatgacatgtg 2124176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 501
Target Start/End: Complemental strand, 10986827 - 10986778
Alignment:
Q  452 tgtgtgttttttaaatccaaccattgattattaatcttaagtgacatgtg 501  Q
    |||||| ||||||||| ||||| ||||| ||||||||||| |||||||||    
T  10986827 tgtgtgctttttaaattcaaccgttgatcattaatcttaactgacatgtg 10986778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 501
Target Start/End: Complemental strand, 41386326 - 41386277
Alignment:
Q  452 tgtgtgttttttaaatccaaccattgattattaatcttaagtgacatgtg 501  Q
    |||||||||||||||||||||| |||||||  ||| |||| |||||||||    
T  41386326 tgtgtgttttttaaatccaaccgttgattaccaatattaaatgacatgtg 41386277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 501
Target Start/End: Original strand, 42633806 - 42633855
Alignment:
Q  452 tgtgtgttttttaaatccaaccattgattattaatcttaagtgacatgtg 501  Q
    |||||| ||||||||||||||| |||||||  |||||||| |||||||||    
T  42633806 tgtgtgctttttaaatccaaccgttgattaccaatcttaaatgacatgtg 42633855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 502 - 596
Target Start/End: Original strand, 53757964 - 53758057
Alignment:
Q  502 cggttttaacaaaaaagctaacagagaggattaaattgattaacagaagtaaaaataaaggatcaaattgagacgttttaaagttatgggaccat 596  Q
    |||||||||| ||||||||||| ||||||||||||||||||||| ||| || |||||| ||| ||||||||||||||||||| ||||| ||||||    
T  53757964 cggttttaacgaaaaagctaac-gagaggattaaattgattaacggaaatagaaataagggaccaaattgagacgttttaaaattatgagaccat 53758057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 285 - 350
Target Start/End: Complemental strand, 53757733 - 53757668
Alignment:
Q  285 ttaaagagaaaatatgtgaggcaatagcagactgcggtgtgtctttttgcaaatatggatggccat 350  Q
    ||||||||||||||||||||| ||| ||||| || |||||||||||||||  ||||||||||||||    
T  53757733 ttaaagagaaaatatgtgagggaatggcagattgaggtgtgtctttttgcggatatggatggccat 53757668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 427 - 552
Target Start/End: Complemental strand, 53757596 - 53757460
Alignment:
Q  427 atgttgcgagtccattgtagactagtgtgtgttttttaaatccaaccattgattattaatcttaagtgacatgtg-----------cggttttaacaaaa 515  Q
    |||||| |||||| |||||||||  |||||| |||||| |||||||| |||||||| |||||||| |||| ||||           ||| ||||| ||||    
T  53757596 atgttgagagtccgttgtagactgatgtgtgctttttagatccaacctttgattatcaatcttaaatgacttgtggcaagacttaacggatttaataaaa 53757497  T
Q  516 aagctaacagagaggattaaattgattaacagaagta 552  Q
    |||||||||||||||| ||| ||||||||| ||||||    
T  53757496 aagctaacagagaggactaacttgattaacggaagta 53757460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 608 - 642
Target Start/End: Original strand, 21570510 - 21570544
Alignment:
Q  608 gaattaagttaagagaccaaacgatgtattaagcc 642  Q
    ||||||||||||| |||||||||||||||||||||    
T  21570510 gaattaagttaagggaccaaacgatgtattaagcc 21570544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 502 - 600
Target Start/End: Original strand, 47606581 - 47606679
Alignment:
Q  502 cggttttaacaaaaaagctaacagagaggattaaattgattaacagaagtaaaaataaaggatcaaattgagacgttttaaagttatgggaccattttg 600  Q
    |||||||| ||||||| ||||| || | || ||| |||| | || ||| |||| ||||  || ||||||||||||||||| |||||||| |||||||||    
T  47606581 cggttttagcaaaaaaactaacggaaaagactaacttgaatgacggaaataaagataatagaccaaattgagacgttttagagttatggaaccattttg 47606679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 609 - 642
Target Start/End: Original strand, 27410769 - 27410802
Alignment:
Q  609 aattaagttaagagaccaaacgatgtattaagcc 642  Q
    |||||||||||||||||||| |||||||||||||    
T  27410769 aattaagttaagagaccaaatgatgtattaagcc 27410802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 612 - 645
Target Start/End: Complemental strand, 33376243 - 33376210
Alignment:
Q  612 taagttaagagaccaaacgatgtattaagcctaa 645  Q
    ||||||||||||||||| ||||||||||||||||    
T  33376243 taagttaagagaccaaatgatgtattaagcctaa 33376210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 504 - 598
Target Start/End: Original strand, 11431448 - 11431542
Alignment:
Q  504 gttttaacaaaaaagctaacagagaggattaaattgattaacagaagtaaaaataaaggatcaaattgagacgttttaaagttatgggaccattt 598  Q
    |||||||||||||| ||| | |||| || ||| ||||||||||||| |||| |||||||| ||||||| ||||||||| |||||||| |||||||    
T  11431448 gttttaacaaaaaaactagcggagatgactaacttgattaacagaaataaagataaaggaccaaattgtgacgttttatagttatggaaccattt 11431542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 612 - 645
Target Start/End: Complemental strand, 24805316 - 24805283
Alignment:
Q  612 taagttaagagaccaaacgatgtattaagcctaa 645  Q
    ||||||||||||||||| ||||||||||||||||    
T  24805316 taagttaagagaccaaatgatgtattaagcctaa 24805283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 452 - 501
Target Start/End: Complemental strand, 26403503 - 26403454
Alignment:
Q  452 tgtgtgttttttaaatccaaccattgattattaatcttaagtgacatgtg 501  Q
    |||||||||||||||| ||||||||||| || ||| |||| |||||||||    
T  26403503 tgtgtgttttttaaattcaaccattgatcatcaattttaaatgacatgtg 26403454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 504 - 600
Target Start/End: Complemental strand, 242577 - 242481
Alignment:
Q  504 gttttaacaaaaaagctaacagagaggattaaattgattaacagaagtaaaaataaaggatcaaattgagacgttttaaagttatgggaccattttg 600  Q
    |||||| ||||||| |||||||| |||| ||| |||||| || ||| |||| |||| ||| ||||||||||||||||| ||||||| ||||||||||    
T  242577 gttttagcaaaaaaactaacagaaaggactaacttgattgacggaaataaagataagggaccaaattgagacgttttagagttatgagaccattttg 242481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 505 - 599
Target Start/End: Original strand, 243572 - 243666
Alignment:
Q  505 ttttaacaaaaaagctaacagagaggattaaattgattaacagaagtaaaaataaaggatcaaattgagacgttttaaagttatgggaccatttt 599  Q
    ||||| ||||||| ||||| || | || ||| |||||| || ||| |||| |||| ||| ||||||||||||||||| |||||||||||||||||    
T  243572 ttttagcaaaaaaactaacggaaatgactaacttgattgacggaaataaagataagggaccaaattgagacgttttagagttatgggaccatttt 243666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 551 - 600
Target Start/End: Original strand, 6710819 - 6710868
Alignment:
Q  551 taaaaataaaggatcaaattgagacgttttaaagttatgggaccattttg 600  Q
    |||| |||| ||||||||||||||||||||| ||||||||||||||||||    
T  6710819 taaagataagggatcaaattgagacgttttagagttatgggaccattttg 6710868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 512 - 599
Target Start/End: Complemental strand, 6709793 - 6709706
Alignment:
Q  512 aaaaaagctaacagagaggattaaattgattaacagaagtaaaaataaaggatcaaattgagacgttttaaagttatgggaccatttt 599  Q
    |||||| ||||| || |||| ||| |||||| || ||| |||| |||| ||| ||||||||||||||||| |||||| ||||||||||    
T  6709793 aaaaaaactaacggaaaggactaacttgattgaccgaaataaagataagggaccaaattgagacgttttagagttataggaccatttt 6709706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 556 - 653
Target Start/End: Original strand, 51219001 - 51219098
Alignment:
Q  556 ataaaggatcaaattgagacgttttaaagttatgggaccattttgnnnnnnngaattaagttaagagaccaaacgatgtattaagcctaaagtaaatt 653  Q
    |||| ||| ||| ||||||||||||  ||||| ||||||||||||       ||||||||||||| ||  |||||||||||||||||| || ||||||    
T  51219001 ataagggaccaatttgagacgttttttagttaggggaccattttgagaaaaagaattaagttaagggagtaaacgatgtattaagccttaattaaatt 51219098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 542 - 646
Target Start/End: Complemental strand, 13513515 - 13513411
Alignment:
Q  542 taacagaagtaaaaataaaggatcaaattgagacgttttaaagttatgggaccattttgnnnnnnngaattaagttaagagaccaaacgatgtattaagc 641  Q
    ||||||||| | | |||| ||| ||| ||||||||||||  ||||| |||||||| |||       ||||||||||||| ||||||| ||||||||||||    
T  13513515 taacagaagaagacataagggaccaatttgagacgttttttagttaggggaccatattgagaaaaagaattaagttaagggaccaaaggatgtattaagc 13513416  T
Q  642 ctaaa 646  Q
    |||||    
T  13513415 ctaaa 13513411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 542 - 646
Target Start/End: Complemental strand, 13603048 - 13602944
Alignment:
Q  542 taacagaagtaaaaataaaggatcaaattgagacgttttaaagttatgggaccattttgnnnnnnngaattaagttaagagaccaaacgatgtattaagc 641  Q
    ||||||||| | | |||| ||| ||| ||||||||||||  ||||| |||||||| |||       ||||||||||||| ||||||| ||||||||||||    
T  13603048 taacagaagaagacataagggaccaatttgagacgttttttagttaggggaccatattgagaaaaagaattaagttaagggaccaaaggatgtattaagc 13602949  T
Q  642 ctaaa 646  Q
    |||||    
T  13602948 ctaaa 13602944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 612 - 645
Target Start/End: Complemental strand, 38010 - 37977
Alignment:
Q  612 taagttaagagaccaaacgatgtattaagcctaa 645  Q
    ||||||||| ||||||||||||||||||||||||    
T  38010 taagttaagggaccaaacgatgtattaagcctaa 37977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 612 - 645
Target Start/End: Complemental strand, 43275775 - 43275742
Alignment:
Q  612 taagttaagagaccaaacgatgtattaagcctaa 645  Q
    ||||||||||||||||| ||||||||||||||||    
T  43275775 taagttaagagaccaaatgatgtattaagcctaa 43275742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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