View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0979-INSERTION-25 (Length: 731)
Name: NF0979-INSERTION-25
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-25 |
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| [»] scaffold0685 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 7 - 365
Target Start/End: Complemental strand, 109025 - 108667
Alignment:
| Q |
7 |
acaaattggcaattttgcataacaattaatctacagaagacataaaaatagaggaaggtgcaaagtcatcatgccattcaagttacccagtagcaaaaca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
109025 |
acaaattggcaattttgcataacaattaatctacagaagacataaaaatagaggaaggtgcaaagtcatcatgccattcaagttacccagtagcaaaaca |
108926 |
T |
|
| Q |
107 |
tctgtgaaaccatgttttgcatattgggtccagaagccgaatatatgttaaaaagtgcaaaagtaataaaagttatactgaagttaacctctaaattgtt |
206 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
108925 |
tctctgaaaccatgttttgcatattgggtccagaagccgaatatatgttaaaaagtgcaaaagtaataaaagttatactgaagttaacctctaaattgtt |
108826 |
T |
|
| Q |
207 |
gaaatttttctgcatttttcacttaattacctttttctgtatgtattaaataaacaaccctgaatcaaatattagtgatgactgaatcctttcattttta |
306 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
108825 |
gaaatttttctgcatttttctcttaattacctttttctgtatgtattaaataaacaaccctgaatcaaatattagtgatgactgaatcctttcattttta |
108726 |
T |
|
| Q |
307 |
gcactgaattgagtttcaaacaggtaaagaaagctttaaagaatgacgcacaccagata |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
108725 |
gcactgaattgagtttcaaacaggtaaagaaagctttaaagaatgacgcacaccagata |
108667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 386 - 729
Target Start/End: Complemental strand, 108430 - 108088
Alignment:
| Q |
386 |
ttatcgaaattattaatcttacttctctgggagttgcaatgaagggtacagttcacgtaaaatcttcacaatttctgagtagtgcgctacactctcaacc |
485 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
108430 |
ttatcgaaattattaatcttacttctctgggagttgcaacgaagggtacagttcacgtaaaatcttcacaatttctgagtagtgcgctacactctcaacc |
108331 |
T |
|
| Q |
486 |
aaacaatgtcttccactagctgaagcattttcgtatgccagaatatgggcatttgcaacatctttcacatacacccatcccaaagtagaatttggaaatg |
585 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
108330 |
aaacaatgtcttccactagctgaagcattctcgtacgccagaatatgggcatttgcaacatctttcacatacacccatcccaaagtagaatttggaaatg |
108231 |
T |
|
| Q |
586 |
tttgtgtacct----gtatcaaggaagtgagagagctattatctgcacagcagaaggacaaaattttgtcctcttgaacacaaacatatttgaagcacat |
681 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
108230 |
tttgtgtacctgtatgtatcaaggaagtgagagagctattatct-----gcagaaggacaaaatcttgtcctcttgaacacaaacatatttgaagcacat |
108136 |
T |
|
| Q |
682 |
agaaactgctaatattcattgaaatagcaacagaatacaattcaataa |
729 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
108135 |
agaaactgctaatattcattgaaatagcaacagaatacaattcaataa |
108088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 367 - 713
Target Start/End: Complemental strand, 89343 - 88999
Alignment:
| Q |
367 |
attatatgcaatctttcagttatcgaaattattaatcttacttctctgggagttgcaatgaagggtacagttcacgtaaaatcttcacaatttctgagta |
466 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||| ||||| |
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| T |
89343 |
attatatgctatcattcagttatcgaaattattaatcttacttctctgggagttgcaacgaagggtacagttcacgtaaaatcctcacaacttcggagta |
89244 |
T |
|
| Q |
467 |
gtgcgctacactctcaaccaaacaatgtcttccactagctgaagcattttcgtatgccagaatatgggcatttgcaacatctttcacatacacccatccc |
566 |
Q |
| |
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||| ||||| |||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
89243 |
gtgtgctactctctcaactaaacaatgtcttccactcgctgaagcattctcgtacgccagaatatgggcatttgcaacatctttcacattgacccatcca |
89144 |
T |
|
| Q |
567 |
aaagtagaatttggaaatgtttgtgtacctgtatcaaggaagtgagagag---ctattatctgcacagcagaaggacaaaattttgtcctcttgaacaca |
663 |
Q |
| |
|
||| ||| |||||||||||| |||| ||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
89143 |
aaactagcatttggaaatgtctgtgcacctgtatcaaggaagtgaaagagcttctattatct-----acagaaggacaaaatcttgtcctcttgaacaca |
89049 |
T |
|
| Q |
664 |
aacatatttgaagcacatagaaactgctaatattcattgaaatagcaaca |
713 |
Q |
| |
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||||||||||||| ||||| |||||||||||||||||| ||||| ||||| |
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| T |
89048 |
aacatatttgaagtacataaaaactgctaatattcattaaaataacaaca |
88999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 367 - 604
Target Start/End: Complemental strand, 2708287 - 2708065
Alignment:
| Q |
367 |
attatatgcaatctttcagttatcgaaattattaatcttacttctctgggagttgcaatgaagggtacagttcacgtaaaatcttcacaatttctgagta |
466 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||| ||| |||||||||||||| | |||| || | | ||||||||||||||| | ||||||||| |
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|
| T |
2708287 |
attatatgcaatctttaagttgctgaaattattaatcttccttttctgggagttgcaacgtagggcactggttacgtaaaatcttcaccagttctgagta |
2708188 |
T |
|
| Q |
467 |
gtgcgctacactctcaaccaaacaatgtcttccactagctgaagcattttcgtatgccagaatatgggcatttgcaacatctttcacatacacccatccc |
566 |
Q |
| |
|
||| ||| |||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2708187 |
gtggactagtctctcaaccaaagaa---------------gaagcattctcgtacgccagaatatgggcatttgcaacatctttcacattgacccatcaa |
2708103 |
T |
|
| Q |
567 |
aaagtagaatttggaaatgtttgtgtacctgtatcaag |
604 |
Q |
| |
|
||| ||| |||| |||||||||||| |||||||||||| |
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| T |
2708102 |
aaactagcatttcgaaatgtttgtgcacctgtatcaag |
2708065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 90182 - 90095
Alignment:
| Q |
7 |
acaaattggcaattttgcataacaattaatctacagaagacataaaaatagaggaaggtgcaaagtcatcatgccattcaagttaccca |
95 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
90182 |
acaaattagcaattttgcataacaattaatctacagaagacacaaaaatagaggaaggtgc-aagtcatcatgacattcaagttaccca |
90095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 251 - 334
Target Start/End: Complemental strand, 2708414 - 2708331
Alignment:
| Q |
251 |
attaaataaacaaccctgaatcaaatattagtgatgactgaatcctttcatttttagcactgaattgagtttcaaacaggtaaa |
334 |
Q |
| |
|
||||||||||||||| |||||| |||| | ||| ||||||||| |||||| | |||||||||||||||||||||||||||||| |
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|
| T |
2708414 |
attaaataaacaaccttgaatcggatatcaatgaggactgaatcttttcatatgtagcactgaattgagtttcaaacaggtaaa |
2708331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 278 - 364
Target Start/End: Complemental strand, 89457 - 89372
Alignment:
| Q |
278 |
ttagtgatgactgaatcctttcatttttagcactgaattgagtttcaaacaggtaaagaaagctttaaagaatgacgcacaccagat |
364 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||||||| ||||| ||||| ||||| |
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|
| T |
89457 |
ttagcgatgactgaatcctttcatttt-agcattgaattgagtttcaaacaagtaaataaagctttaatgaatgtggcacatcagat |
89372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 190
Target Start/End: Complemental strand, 90058 - 89964
Alignment:
| Q |
97 |
tagcaaaacatctgtgaaaccatgttttgcatattggg-tccagaagccgaatatatgttaaaaagtgcaaaagtaataaaagttatactgaagt |
190 |
Q |
| |
|
||||||||| || |||||||||||| || | || |||| |||||| || |||||| |||||||| || || || ||||||||||||||||||||| |
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|
| T |
90058 |
tagcaaaacctcagtgaaaccatgtgttacgtactggggtccagaggctgaatatgtgttaaaaggtacagaaataataaaagttatactgaagt |
89964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 429 - 555
Target Start/End: Complemental strand, 25935971 - 25935845
Alignment:
| Q |
429 |
gggtacagttcacgtaaaatcttcacaatttctgagtagtgcgctacactctcaaccaaacaatgtcttccactagctgaagcattttcgtatgccagaa |
528 |
Q |
| |
|
|||||||| |||||||||||| | ||| |||||| ||||| | || |||||| ||||||||| ||||||||||||||||||| | || |||||||||| |
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|
| T |
25935971 |
gggtacagatcacgtaaaatcatagcaagttctgaatagtgtaccactctctcagccaaacaatatcttccactagctgaagcagtctcatatgccagaa |
25935872 |
T |
|
| Q |
529 |
tatgggcatttgcaacatctttcacat |
555 |
Q |
| |
|
||||||| || |||||||||||||||| |
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|
| T |
25935871 |
tatgggcgttagcaacatctttcacat |
25935845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 495 - 565
Target Start/End: Complemental strand, 26103054 - 26102984
Alignment:
| Q |
495 |
cttccactagctgaagcattttcgtatgccagaatatgggcatttgcaacatctttcacatacacccatcc |
565 |
Q |
| |
|
|||||||||||||||||| | || ||||| |||| ||||| || |||||||||||||||| |||||||| |
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|
| T |
26103054 |
cttccactagctgaagcaatctcatatgcgtgaatgtgggcgttagcaacatctttcacattgacccatcc |
26102984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0685
Description:
Target: scaffold0685; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 484 - 604
Target Start/End: Complemental strand, 5644 - 5524
Alignment:
| Q |
484 |
ccaaacaatgtcttccactagctgaagcattttcgtatgccagaatatgggcatttgcaacatctttcacatacacccatcccaaagtagaatttggaaa |
583 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || ||||| ||||||| || || |||||||| ||||||| | |||||| ||||||| ||| |||| |
|
|
| T |
5644 |
ccaaacaatatcttccactagttgaagcatcctcatatgcatgaatatgagcgttcgcaacatccttcacattgatccatccaaaagtagcattcagaaa |
5545 |
T |
|
| Q |
584 |
tgtttgtgtacctgtatcaag |
604 |
Q |
| |
|
|||||||| ||||| |||||| |
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|
| T |
5544 |
tgtttgtgaacctgcatcaag |
5524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 483 - 555
Target Start/End: Complemental strand, 29549972 - 29549900
Alignment:
| Q |
483 |
accaaacaatgtcttccactagctgaagcattttcgtatgccagaatatgggcatttgcaacatctttcacat |
555 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| || ||||| ||||||| |||||||||| ||| ||||||| |
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|
| T |
29549972 |
accaaacaatatcttccactagctgaagcattctcatatgcttgaatatgtgcatttgcaatatccttcacat |
29549900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 484 - 604
Target Start/End: Complemental strand, 29556544 - 29556424
Alignment:
| Q |
484 |
ccaaacaatgtcttccactagctgaagcattttcgtatgccagaatatgggcatttgcaacatctttcacatacacccatcccaaagtagaatttggaaa |
583 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || ||||| ||||||| || || |||||||| ||||||| | |||||| ||||||| ||| |||| |
|
|
| T |
29556544 |
ccaaacaatatcttccactagttgaagcatcctcatatgcatgaatatgagcgttcgcaacatccttcacattgatccatccaaaagtagcattcagaaa |
29556445 |
T |
|
| Q |
584 |
tgtttgtgtacctgtatcaag |
604 |
Q |
| |
|
|||||||| ||||| |||||| |
|
|
| T |
29556444 |
tgtttgtgaacctgcatcaag |
29556424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 484 - 553
Target Start/End: Complemental strand, 29559893 - 29559824
Alignment:
| Q |
484 |
ccaaacaatgtcttccactagctgaagcattttcgtatgccagaatatgggcatttgcaacatctttcac |
553 |
Q |
| |
|
|||| |||| ||||||||| |||||||||| ||| ||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
29559893 |
ccaagcaatatcttccacttgctgaagcatcttcatatgcattaatatgggcgtttgcaacatccttcac |
29559824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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