View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0979-INSERTION-27 (Length: 781)

Name: NF0979-INSERTION-27
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0979-INSERTION-27
NF0979-INSERTION-27
[»] chr2 (1 HSPs)
chr2 (73-777)||(38186800-38187504)
[»] chr4 (1 HSPs)
chr4 (441-518)||(42519949-42520025)


Alignment Details
Target: chr2 (Bit Score: 673; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 73 - 777
Target Start/End: Complemental strand, 38187504 - 38186800
Alignment:
Q  73 gtggaaagtggcacttgcaaattcaaatgtctcctattatggttgtatacacaccatatatttttaactcagttaccagttccttgcaccttttgcgttg 172  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38187504 gtggaaagtggcacttacaaattcaaatgtctcctattatggttgtatacacaccatatatttttaactcagttaccagttccttgcaccttttgcgttg 38187405  T
Q  173 gatgtttattccctaggattttttggcctaggatttgaatcaaactggaagattatgatagaaattgtaggtgttcataaatagacataacttgtttcat 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38187404 gatgtttattccctaggattttttggcctaggatttgaatcaaactggaagattatgatagaaattgtaggtgttcataaatagacataacttgtttcat 38187305  T
Q  273 agaatattgtttgtatttaataatattgacaattatggttctgatcttaaatgttacagcagaaatgctgtggacagtgaatatcaggaggctatctgca 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38187304 agaatattgtttgtatttaataatattgacaattatggttctgatcttaaatgttacagcagaaatgctgtggacagtgagtatcaggaggctatctgca 38187205  T
Q  373 aagatgaaattggattccatgcagttatggggaaaggacattgttgactgtccaatctgatggtccagaaaaatgcagatttaaattttatttttagaat 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38187204 aagatgaaattggattccatgcagttatggggaaaggacattgttgactgtccaatctgatggtccagaaaaatgcagatttaaattttatttttagaat 38187105  T
Q  473 ttaaaatatcaagtttgaatctagaccgtcatatcttgattgaatgctcatcgatatctcaaatgtatgtaatatcaactgcacgagagtttgatcctaa 572  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  38187104 ttaaaatatcaagtttgaatgtagaccgtcatatcttgattgaatgctcatcgatatctcgaatgtgtgtaatatcaactgcacgagagtttgatcctaa 38187005  T
Q  573 tattgacatatcaaatgactttgcaaccttgtacattgttgatgaatctagtaccaataagtattgaaagatggttccaaacagaatttgaactcagatt 672  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  38187004 tattgacatatcaaatgactttgcaaccttgtacattgttgatgaatctagtaccaataagtattgaaagatggttccaaacagaatttgaactcatatt 38186905  T
Q  673 ctattgagtggtctttcttaactaaaactcatcaatgatttgagcttcataacaaaagataataaagagaacttacaaaagttgacttatttcatatttt 772  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  38186904 ctattgagtggtctttcttaactaaaactcatcaacgatttgagcttcataacaaaagattataaagagaacttacaaaagttgacttatttcatatttt 38186805  T
Q  773 ttaca 777  Q
    |||||    
T  38186804 ttaca 38186800  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 441 - 518
Target Start/End: Original strand, 42519949 - 42520025
Alignment:
Q  441 aaaaatgcagatttaaattttatttttagaatttaaaatatcaagtttgaatctagaccgtcatatcttgattgaatg 518  Q
    |||||||||||||| |||||| |||| | ||||||||||||  ||||||||||||||  |||   |||||||||||||    
T  42519949 aaaaatgcagatttcaattttgtttt-ataatttaaaatattgagtttgaatctagattgtctggtcttgattgaatg 42520025  T

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