View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0979-INSERTION-27 (Length: 781)

Name: NF0979-INSERTION-27
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0979-INSERTION-27
NF0979-INSERTION-27
[»] chr2 (1 HSPs)
chr2 (73-777)||(38186800-38187504)
[»] chr4 (1 HSPs)
chr4 (441-518)||(42519949-42520025)


Alignment Details
Target: chr2 (Bit Score: 673; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 73 - 777
Target Start/End: Complemental strand, 38187504 - 38186800
Alignment:
73 gtggaaagtggcacttgcaaattcaaatgtctcctattatggttgtatacacaccatatatttttaactcagttaccagttccttgcaccttttgcgttg 172  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38187504 gtggaaagtggcacttacaaattcaaatgtctcctattatggttgtatacacaccatatatttttaactcagttaccagttccttgcaccttttgcgttg 38187405  T
173 gatgtttattccctaggattttttggcctaggatttgaatcaaactggaagattatgatagaaattgtaggtgttcataaatagacataacttgtttcat 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38187404 gatgtttattccctaggattttttggcctaggatttgaatcaaactggaagattatgatagaaattgtaggtgttcataaatagacataacttgtttcat 38187305  T
273 agaatattgtttgtatttaataatattgacaattatggttctgatcttaaatgttacagcagaaatgctgtggacagtgaatatcaggaggctatctgca 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
38187304 agaatattgtttgtatttaataatattgacaattatggttctgatcttaaatgttacagcagaaatgctgtggacagtgagtatcaggaggctatctgca 38187205  T
373 aagatgaaattggattccatgcagttatggggaaaggacattgttgactgtccaatctgatggtccagaaaaatgcagatttaaattttatttttagaat 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38187204 aagatgaaattggattccatgcagttatggggaaaggacattgttgactgtccaatctgatggtccagaaaaatgcagatttaaattttatttttagaat 38187105  T
473 ttaaaatatcaagtttgaatctagaccgtcatatcttgattgaatgctcatcgatatctcaaatgtatgtaatatcaactgcacgagagtttgatcctaa 572  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
38187104 ttaaaatatcaagtttgaatgtagaccgtcatatcttgattgaatgctcatcgatatctcgaatgtgtgtaatatcaactgcacgagagtttgatcctaa 38187005  T
573 tattgacatatcaaatgactttgcaaccttgtacattgttgatgaatctagtaccaataagtattgaaagatggttccaaacagaatttgaactcagatt 672  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
38187004 tattgacatatcaaatgactttgcaaccttgtacattgttgatgaatctagtaccaataagtattgaaagatggttccaaacagaatttgaactcatatt 38186905  T
673 ctattgagtggtctttcttaactaaaactcatcaatgatttgagcttcataacaaaagataataaagagaacttacaaaagttgacttatttcatatttt 772  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
38186904 ctattgagtggtctttcttaactaaaactcatcaacgatttgagcttcataacaaaagattataaagagaacttacaaaagttgacttatttcatatttt 38186805  T
773 ttaca 777  Q
    |||||    
38186804 ttaca 38186800  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 441 - 518
Target Start/End: Original strand, 42519949 - 42520025
Alignment:
441 aaaaatgcagatttaaattttatttttagaatttaaaatatcaagtttgaatctagaccgtcatatcttgattgaatg 518  Q
    |||||||||||||| |||||| |||| | ||||||||||||  ||||||||||||||  |||   |||||||||||||    
42519949 aaaaatgcagatttcaattttgtttt-ataatttaaaatattgagtttgaatctagattgtctggtcttgattgaatg 42520025  T

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