View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0979-INSERTION-28 (Length: 736)

Name: NF0979-INSERTION-28
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0979-INSERTION-28
NF0979-INSERTION-28
[»] chr8 (28 HSPs)
chr8 (8-736)||(5290328-5291056)
chr8 (500-736)||(14949491-14949728)
chr8 (493-736)||(5306411-5306655)
chr8 (8-293)||(5306039-5306324)
chr8 (493-736)||(5282741-5282985)
chr8 (513-736)||(15125661-15125884)
chr8 (12-311)||(15125295-15125594)
chr8 (8-292)||(11832574-11832858)
chr8 (16-310)||(5283259-5283553)
chr8 (504-736)||(5313630-5313863)
chr8 (8-291)||(14950092-14950375)
chr8 (493-736)||(11833109-11833341)
chr8 (8-293)||(5313252-5313537)
chr8 (540-736)||(5351639-5351835)
chr8 (458-496)||(8536153-8536191)
chr8 (369-498)||(28769343-28769484)
chr8 (458-498)||(8629034-8629074)
chr8 (399-451)||(11494130-11494182)
chr8 (458-498)||(14482127-14482167)
chr8 (458-498)||(14949813-14949853)
chr8 (458-498)||(31884519-31884559)
chr8 (425-484)||(44617856-44617918)
chr8 (456-498)||(11476990-11477032)
chr8 (460-498)||(12972781-12972819)
chr8 (468-498)||(30172754-30172784)
chr8 (326-363)||(1096612-1096649)
chr8 (458-491)||(1112785-1112818)
chr8 (425-490)||(42597334-42597404)
[»] chr6 (13 HSPs)
chr6 (504-736)||(31526451-31526684)
chr6 (8-293)||(31526770-31527058)
chr6 (458-498)||(31668790-31668830)
chr6 (425-498)||(10452427-10452505)
chr6 (425-498)||(29274296-29274374)
chr6 (372-494)||(2034453-2034579)
chr6 (458-490)||(4247739-4247771)
chr6 (458-498)||(29249399-29249439)
chr6 (458-490)||(31461611-31461643)
chr6 (459-498)||(8010282-8010321)
chr6 (424-490)||(725721-725786)
chr6 (461-490)||(4003708-4003737)
chr6 (458-495)||(33259744-33259781)
[»] chr4 (15 HSPs)
chr4 (368-498)||(23819015-23819156)
chr4 (369-498)||(22684525-22684661)
chr4 (458-498)||(2980576-2980616)
chr4 (458-498)||(4191664-4191704)
chr4 (458-496)||(47970245-47970283)
chr4 (425-498)||(54325104-54325182)
chr4 (417-498)||(55437345-55437429)
chr4 (396-451)||(969358-969413)
chr4 (399-490)||(4798600-4798696)
chr4 (425-498)||(30207638-30207715)
chr4 (425-490)||(40709448-40709517)
chr4 (435-490)||(26190173-26190230)
chr4 (458-487)||(24160926-24160955)
chr4 (458-487)||(25487650-25487679)
chr4 (427-498)||(44319875-44319950)
[»] chr5 (19 HSPs)
chr5 (413-498)||(11684348-11684436)
chr5 (458-497)||(7096232-7096271)
chr5 (458-498)||(13224354-13224394)
chr5 (458-498)||(20982240-20982280)
chr5 (425-498)||(12407728-12407805)
chr5 (458-498)||(26516223-26516263)
chr5 (458-498)||(29115318-29115358)
chr5 (458-490)||(29588813-29588845)
chr5 (425-498)||(32059656-32059733)
chr5 (413-495)||(35135714-35135804)
chr5 (459-497)||(10798510-10798548)
chr5 (425-490)||(16945050-16945118)
chr5 (370-424)||(18906353-18906407)
chr5 (425-498)||(19177404-19177482)
chr5 (368-433)||(28409368-28409433)
chr5 (457-490)||(31030232-31030265)
chr5 (462-499)||(38813202-38813239)
chr5 (457-498)||(40499779-40499820)
chr5 (453-490)||(42849897-42849934)
[»] chr7 (12 HSPs)
chr7 (368-484)||(39345422-39345538)
chr7 (428-490)||(33894556-33894622)
chr7 (458-498)||(7244627-7244667)
chr7 (425-489)||(24909603-24909667)
chr7 (458-498)||(45078218-45078258)
chr7 (430-498)||(45593791-45593864)
chr7 (458-498)||(46213728-46213768)
chr7 (436-490)||(941477-941532)
chr7 (458-497)||(24973870-24973909)
chr7 (458-496)||(3610845-3610883)
chr7 (425-490)||(5369758-5369826)
chr7 (457-498)||(5628670-5628711)
[»] chr2 (15 HSPs)
chr2 (413-498)||(33267571-33267661)
chr2 (425-498)||(29430681-29430758)
chr2 (425-490)||(10143105-10143175)
chr2 (368-433)||(29316778-29316843)
chr2 (425-498)||(37053519-37053597)
chr2 (383-435)||(1056371-1056423)
chr2 (458-498)||(33197344-33197384)
chr2 (425-490)||(35755569-35755639)
chr2 (458-490)||(41033055-41033087)
chr2 (427-498)||(17952770-17952846)
chr2 (460-498)||(9478224-9478262)
chr2 (458-496)||(13864577-13864615)
chr2 (457-491)||(30990473-30990507)
chr2 (458-487)||(5133708-5133737)
chr2 (425-490)||(18962105-18962175)
[»] scaffold0590 (1 HSPs)
scaffold0590 (458-498)||(1179-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (458-498)||(2756-2796)
[»] chr3 (16 HSPs)
chr3 (458-498)||(41028956-41028996)
chr3 (425-485)||(20669562-20669622)
chr3 (458-498)||(24268260-24268300)
chr3 (368-424)||(37273145-37273201)
chr3 (458-498)||(43116533-43116573)
chr3 (426-502)||(49586984-49587064)
chr3 (459-498)||(16790462-16790501)
chr3 (457-496)||(24158606-24158645)
chr3 (459-498)||(48528503-48528542)
chr3 (425-495)||(8007762-8007837)
chr3 (428-498)||(27792797-27792872)
chr3 (463-496)||(11039425-11039458)
chr3 (425-490)||(20192673-20192743)
chr3 (436-489)||(23808308-23808366)
chr3 (458-499)||(24413608-24413649)
chr3 (425-498)||(38462206-38462284)
[»] chr1 (21 HSPs)
chr1 (458-496)||(13037791-13037829)
chr1 (458-498)||(24146364-24146404)
chr1 (458-498)||(35350546-35350586)
chr1 (425-490)||(15579416-15579485)
chr1 (374-433)||(34290238-34290297)
chr1 (368-498)||(44032002-44032144)
chr1 (425-498)||(45107548-45107625)
chr1 (425-491)||(15360826-15360897)
chr1 (460-490)||(39339856-39339886)
chr1 (463-492)||(488932-488961)
chr1 (458-487)||(2462903-2462932)
chr1 (438-490)||(5160342-5160397)
chr1 (451-492)||(6292424-6292465)
chr1 (375-424)||(12564509-12564558)
chr1 (425-498)||(30259554-30259632)
chr1 (383-424)||(37842373-37842414)
chr1 (458-495)||(41638177-41638214)
chr1 (465-498)||(42550166-42550199)
chr1 (425-498)||(44422626-44422702)
chr1 (461-498)||(46712298-46712335)
chr1 (465-498)||(50764486-50764519)
[»] scaffold0654 (1 HSPs)
scaffold0654 (458-498)||(6742-6782)
[»] scaffold0014 (1 HSPs)
scaffold0014 (458-498)||(116661-116701)


Alignment Details
Target: chr8 (Bit Score: 677; Significance: 0; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 8 - 736
Target Start/End: Complemental strand, 5291056 - 5290328
Alignment:
Q  8 aagttaaggtttcattcgatcgtcttactaattttttgcttgatgaagaactaaacaatgatgatagtgaaagaaacatacagcaactttcggtcaatgc 107  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5291056 aagttaaggtttcgttcgatcgtcttactaattttttgcttgatgaagaactaaacaatgatgatagtgaaagaaacatacagcaactttcggtcaatgc 5290957  T
Q  108 tgtggagattcaagatggaaactttaattgggatcatggatctatgtctccaaccttaagggatgtaaatttagaaatcaaatggagacagaaaatagca 207  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5290956 tgtggagattcaagatggaaacttcaattgggatcatgaatctatgtctccaaccttaaaggatgtaaatttagaaatcaaatggagacagaaaatagca 5290857  T
Q  208 gtttgtggaccagttggagctggaaaatcatcacttttgtatgcaatacttggagaaattcccaagattcaaggaactgtaagttagttataaaacagat 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5290856 gtttgtggaccagttggagctggaaaatcatcacttttgtatgcaatacttggagagattcccaagattcaaggaactgtaagttagttataaaacagat 5290757  T
Q  308 ttagtaataaacatagttttaaggcatgtttgaattgactcatttgagtttatttaatagcatgtccataagttcttttcagcttcattctataagttct 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5290756 ttagtaataaacatagttttaaggcatgtttgaattgactcatttgagtttatttaatagcatgtccataagttcttttcagcttcattctataagtttt 5290657  T
Q  408 tcaagatagcttatgaatatagcttacatgaaaacagtttgactattttatttgttatagaaatagcttatacataagcacttgtatgatactttgctat 507  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5290656 tcacgatagcttatgaatatagcttacatgaaaacagtttgactattttatttgttatagaaatagcttatacataagcacttgtatgatactttgctat 5290557  T
Q  508 aatggaaacaggttaatgtaggtggcacacttgcctatgtttctcaatcttcttggatacaaagtggaacagttcaagaaaatatactctttggcaagcc 607  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5290556 aatggaaacaggttaatgttggtggcacactggcctatgtttctcaatcttcttggatacaaagtggaacagttcaagaaaatatactctttggcaagcc 5290457  T
Q  608 aatgcataaaagaagatacgagaaagcaatcaaagcttgtgccttagataaggatataaatgattttagccatggtgatcttacagaaatcggtcagaga 707  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5290456 aatggataaaagaagatatgagaaagcaatcaaagcttgtgccttagataaggatatcaatgattttagccatggtgatcttacagaaatcggtcagaga 5290357  T
Q  708 gggattaacatgagcggaggacaaaagca 736  Q
    |||||||||||||| ||||||||||||||    
T  5290356 gggattaacatgagtggaggacaaaagca 5290328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 500 - 736
Target Start/End: Complemental strand, 14949728 - 14949491
Alignment:
Q  500 tttgctataatggaaa-caggttaatgtaggtggcacacttgcctatgtttctcaatcttcttggatacaaagtggaacagttcaagaaaatatactctt 598  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||    
T  14949728 tttgctataatggaaaacaggttaatgtaggtggcacactagcctatgtttcccaaacttcttggatacaaagtggaacagttcaagataatatactctt 14949629  T
Q  599 tggcaagccaatgcataaaagaagatacgagaaagcaatcaaagcttgtgccttagataaggatataaatgattttagccatggtgatcttacagaaatc 698  Q
    ||||||| ||||| | |||| |||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||     
T  14949628 tggcaaggcaatggacaaaacaagatatgagaaagcaattaaagcttgtgctttagataaggatatcaatgattttagccatggtgatcttacagaaata 14949529  T
Q  699 ggtcagagagggattaacatgagcggaggacaaaagca 736  Q
    ||| ||||||||||||||||||| ||||||||||||||    
T  14949528 ggtgagagagggattaacatgagtggaggacaaaagca 14949491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 493 - 736
Target Start/End: Original strand, 5306411 - 5306655
Alignment:
Q  493 atgatactttgctataatggaaa-caggttaatgtaggtggcacacttgcctatgtttctcaatcttcttggatacaaagtggaacagttcaagaaaata 591  Q
    |||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5306411 atgatattttactataatggaaaacaggttaatgtaggtggcacacttgcctatgtttctcaatcttcttggatacaaagtggaacagttcaagaaaata 5306510  T
Q  592 tactctttggcaagccaatgcataaaagaagatacgagaaagcaatcaaagcttgtgccttagataaggatataaatgattttagccatggtgatcttac 691  Q
    |||||||||||||||||||| |||||||||||||  | |||||||| ||||||||||| |||||||||||  | |||||||| |||||||||||||||||    
T  5306511 tactctttggcaagccaatggataaaagaagatatcaaaaagcaattaaagcttgtgctttagataaggacttcaatgatttcagccatggtgatcttac 5306610  T
Q  692 agaaatcggtcagagagggattaacatgagcggaggacaaaagca 736  Q
    |||||| || ||||||||||| || ||||| ||||||||||||||    
T  5306611 agaaattggccagagagggatcaatatgagtggaggacaaaagca 5306655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 5306039 - 5306324
Alignment:
Q  8 aagttaaggtttcattcgatcgtcttactaattttttgcttgatgaagaactaaacaatgatgatagtgaaagaaacatacagcaactttcggtcaatgc 107  Q
    ||||||||||||| ||||||||||| | |||  || ||||||||||||||||||||||||||||||||||||||||| || |||||  |  ||| |||||    
T  5306039 aagttaaggtttcgttcgatcgtctcaataaccttctgcttgatgaagaactaaacaatgatgatagtgaaagaaacctagagcaatgtaaggttaatgc 5306138  T
Q  108 tgtggagattcaagatggaaactttaattgggatcatggatctatgtctccaaccttaagggatgtaaatttagaaatcaaatggagacagaaaatagca 207  Q
    | |||| ||||||||||| ||||| | ||||||||||  |||| |||||||||| ||||  ||||||||| |||||||||||||| ||||||||||||||    
T  5306139 tatggaaattcaagatggcaacttcatttgggatcataaatctttgtctccaactttaacagatgtaaatatagaaatcaaatggggacagaaaatagca 5306238  T
Q  208 gtttgtggaccagttggagctggaaaatcatcacttttgtatgcaatacttggagaaattcccaagattcaaggaactgtaagtta 293  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||    
T  5306239 gtttgtggaccagttggagccggaaaatcatcacttttgtatgcaatacttggagagattcctaagatttaaggagctgtaagtta 5306324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 493 - 736
Target Start/End: Complemental strand, 5282985 - 5282741
Alignment:
Q  493 atgatactttgctataatgga-aacaggttaatgtaggtggcacacttgcctatgtttctcaatcttcttggatacaaagtggaacagttcaagaaaata 591  Q
    |||||| ||| |||||||||| ||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  5282985 atgatattttactataatggagaacaggttaatgtaggtggaactcttgcctatgtttctcagtcttcttggatacaaagtggaacagttcaagataata 5282886  T
Q  592 tactctttggcaagccaatgcataaaagaagatacgagaaagcaatcaaagcttgtgccttagataaggatataaatgattttagccatggtgatcttac 691  Q
    |||| ||||||||| | ||| | |||| |||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  5282885 tactatttggcaagaccatggacaaaacaagatatgagaaagcaattaaagcttgtgccttagataaggatatcaatgatttcagccatggtgatcttac 5282786  T
Q  692 agaaatcggtcagagagggattaacatgagcggaggacaaaagca 736  Q
    |||||| |||||||||||||| || || || ||||||||||||||    
T  5282785 agaaataggtcagagagggatcaatataagtggaggacaaaagca 5282741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 513 - 736
Target Start/End: Original strand, 15125661 - 15125884
Alignment:
Q  513 aaacaggttaatgtaggtggcacacttgcctatgtttctcaatcttcttggatacaaagtggaacagttcaagaaaatatactctttggcaagccaatgc 612  Q
    ||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||  ||||     
T  15125661 aaacaggtttatgtaggtggcacactagcctatgtctctcaatcttcttggatacaaagtggaacagttcaagataatatactatttggcaaggaaatgg 15125760  T
Q  613 ataaaagaagatacgagaaagcaatcaaagcttgtgccttagataaggatataaatgattttagccatggtgatcttacagaaatcggtcagagagggat 712  Q
    | |||| |||||| ||||||||||| ||||||||||| ||||||||||||||  ||||||||||||| ||||||||||||||||| ||| ||||||||||    
T  15125761 acaaaacaagatatgagaaagcaattaaagcttgtgctttagataaggatatcgatgattttagccacggtgatcttacagaaataggtgagagagggat 15125860  T
Q  713 taacatgagcggaggacaaaagca 736  Q
    ||||||||| ||||||||||||||    
T  15125861 taacatgagtggaggacaaaagca 15125884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 15125295 - 15125594
Alignment:
Q  12 taaggtttcattcgatcgtcttactaattttttgcttgatgaagaactaaacaatgatgatagtgaaagaaacatacagcaactttcggtcaatgctgtg 111  Q
    ||||||||||||||||||||||| ||| ||||| ||||||||||| || |||||| |||| ||||||| |||| || | ||   ||| || |||||| |     
T  15125295 taaggtttcattcgatcgtcttaataacttttttcttgatgaagaccttaacaataatgagagtgaaaaaaacttaaaccagtgttcagttaatgcttta 15125394  T
Q  112 gagattcaagatggaaactttaattgggatcatggatctatgtctccaaccttaagggatgtaaatttagaaatcaaatggagacagaaaatagcagttt 211  Q
     | ||||||||||||||||| | ||||||||||| ||||||||||||| ||||||  ||||| |||||||| || ||||||||||||||||| |||||||    
T  15125395 caaattcaagatggaaacttcatttgggatcatgaatctatgtctccagccttaaaagatgttaatttagagataaaatggagacagaaaattgcagttt 15125494  T
Q  212 gtggaccagttggagctggaaaatcatcacttttgtatgcaatacttggagaaattcccaagattcaaggaactgtaagttagttataaaacagatttag 311  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||| || || ||||||  ||||||||||||||| | ||| |||| ||||||    
T  15125495 gtggaccagttggatctggaaaatcatctcttttgtatgcaatacttggagagatccctaagatttcaggaactgtaagttactaatagaacatatttag 15125594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 8 - 292
Target Start/End: Original strand, 11832574 - 11832858
Alignment:
Q  8 aagttaaggtttcattcgatcgtcttactaattttttgcttgatgaagaactaaacaatgatgatagtgaaagaaacatacagcaactttcggtcaatgc 107  Q
    ||||||| ||||  ||||||||||||| ||| |||||||||||||||||| || ||||||||||| | ||||||||| || |||||  ||| || ||| |    
T  11832574 aagttaaagttttgttcgatcgtcttaataactttttgcttgatgaagaaatatacaatgatgatggcgaaagaaacttaaagcaatgttcagttaattc 11832673  T
Q  108 tgtggagattcaagatggaaactttaattgggatcatggatctatgtctccaaccttaagggatgtaaatttagaaatcaaatggagacagaaaatagca 207  Q
    | |||| |||||||||||| |||| | ||| ||||||  |||| |||||||||| ||||| ||||| ||| |||||||||  ||| |||||||||| |||    
T  11832674 tatggaaattcaagatggagacttcatttgtgatcataaatctgtgtctccaactttaagagatgttaatatagaaatcaggtggggacagaaaattgca 11832773  T
Q  208 gtttgtggaccagttggagctggaaaatcatcacttttgtatgcaatacttggagaaattcccaagattcaaggaactgtaagtt 292  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||  ||||||||||||||    
T  11832774 gtttgtggaccagttggagctggaaaatcatctcttttgtatgcaatactaggagagattccaaagatttcaggaactgtaagtt 11832858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 5283553 - 5283259
Alignment:
Q  16 gtttcattcgatcgtcttactaattttttgcttgatgaagaactaaacaatgatgatagtgaaagaaacatacagcaactttcggtcaatgctgtggaga 115  Q
    ||||| || |||||||||| ||| |||||||||||||||||  |||||||||||||| | ||||||| | |  ||||| |||| || |||||| |||| |    
T  5283553 gtttcgtttgatcgtcttaataactttttgcttgatgaagagataaacaatgatgatggcgaaagaagcttgaagcaattttcagttaatgctatggaaa 5283454  T
Q  116 ttcaagatggaaactttaattgggatcatggatctatgtctccaaccttaagggatgtaaatttagaaatcaaatggagacagaaaatagcagtttgtgg 215  Q
    |||||||||||||||| | ||||||||||| |||  |||||||||| ||||| ||||| ||| |||||||||   || |||||||||| |||||||||||    
T  5283453 ttcaagatggaaacttcatttgggatcatgaatcagtgtctccaactttaagagatgttaatatagaaatcaggcggggacagaaaattgcagtttgtgg 5283354  T
Q  216 accagttggagctggaaaatcatcacttttgtatgcaatacttggagaaattcccaagattcaaggaactgtaagttagttataaaacagattta 310  Q
    |||||||||||||||||||||||| ||||||||| ||||||| ||||| ||||| ||||||  ||||||||||||||| | ||| |||| |||||    
T  5283353 accagttggagctggaaaatcatctcttttgtattcaatactaggagagattccaaagatttcaggaactgtaagttactaatagaacatattta 5283259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 504 - 736
Target Start/End: Original strand, 5313630 - 5313863
Alignment:
Q  504 ctataatggaaa-caggttaatgtaggtggcacacttgcctatgtttctcaatcttcttggatacaaagtggaacagttcaagaaaatatactctttggc 602  Q
    |||||||||||| ||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  5313630 ctataatggaaatcaggttaatgtaggtagcgcactagcctatgtttctcaatcttcttggatacaaagtggaacagttcgagataatatactctttggc 5313729  T
Q  603 aagccaatgcataaaagaagatacgagaaagcaatcaaagcttgtgccttagataaggatataaatgattttagccatggtgatcttacagaaatcggtc 702  Q
    ||||||||| | |||  || ||| ||||| || || ||||  ||||||||||||||||||||  ||||||||||| |||| |||||||||||||| ||||    
T  5313730 aagccaatggacaaagaaaaatatgagaatgccattaaagtatgtgccttagataaggatattgatgattttagctatggcgatcttacagaaataggtc 5313829  T
Q  703 agagagggattaacatgagcggaggacaaaagca 736  Q
    |||||||||||||| | || |||||||| |||||    
T  5313830 agagagggattaacgtaagtggaggacagaagca 5313863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 8 - 291
Target Start/End: Complemental strand, 14950375 - 14950092
Alignment:
Q  8 aagttaaggtttcattcgatcgtcttactaattttttgcttgatgaagaactaaacaatgatgatagtgaaagaaacatacagcaactttcggtcaatgc 107  Q
    ||||||||||||| || ||||||||||  |  |||||||||| ||||||||||||||||||||||||| |||||||| || ||| |  || ||| |||||    
T  14950375 aagttaaggtttcgtttgatcgtcttaaaagctttttgcttgctgaagaactaaacaatgatgatagtaaaagaaacttaaagccatgtttggttaatgc 14950276  T
Q  108 tgtggagattcaagatggaaactttaattgggatcatggatctatgtctccaaccttaagggatgtaaatttagaaatcaaatggagacagaaaatagca 207  Q
    ||| || ||||||||||| ||||| | ||||||||||| |||| | |||||||| ||||   |||| |||||||| |||||||||||||| ||||| |||    
T  14950275 tgtcgacattcaagatggtaacttcatttgggatcatgaatctgtatctccaactttaacaaatgtgaatttagatatcaaatggagacacaaaattgca 14950176  T
Q  208 gtttgtggaccagttggagctggaaaatcatcacttttgtatgcaatacttggagaaattcccaagattcaaggaactgtaagt 291  Q
    ||||| ||| |||| ||| | ||||||||||| ||||||||||||||||| ||||| ||| |||||||||||||||||||||||    
T  14950175 gtttgcggagcagtgggatccggaaaatcatctcttttgtatgcaatactcggagagatttccaagattcaaggaactgtaagt 14950092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 493 - 736
Target Start/End: Original strand, 11833109 - 11833341
Alignment:
Q  493 atgatactttgctataatggaaa-caggttaatgtaggtggcacacttgcctatgtttctcaatcttcttggatacaaagtggaacagttcaagaaaata 591  Q
    |||||| |||| | ||||||||| |||||||| |||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||         
T  11833109 atgatattttgatgtaatggaaaacaggttaaggtaggtgaaactcttgcctatgtttctcaatcttcttggatacaaagtggaacagttcaaga----- 11833203  T
Q  592 tactctttggcaagccaatgcataaaagaagatacgagaaagcaatcaaagcttgtgccttagataaggatataaatgattttagccatggtgatcttac 691  Q
           ||||||| | ||| | |||| |||||| ||||||||||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||||||    
T  11833204 -------tggcaagaccatggacaaaacaagatatgagaaagcaattaaagcttgttccttacataaggatatcaatgattttagccatggtgatcttac 11833296  T
Q  692 agaaatcggtcagagagggattaacatgagcggaggacaaaagca 736  Q
    |||||| |||||||||||||| || || || ||||||||||||||    
T  11833297 agaaattggtcagagagggatcaatataagtggaggacaaaagca 11833341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 8 - 293
Target Start/End: Original strand, 5313252 - 5313537
Alignment:
Q  8 aagttaaggtttcattcgatcgtcttactaattttttgcttgatgaagaactaaacaatgatgatagtgaaagaaacatacagcaactttcggtcaatgc 107  Q
    ||||||||||||| || |||||||| |  |  ||| ||||||||||||| || |  |||||||||| || |||||| ||| |||||  ||| ||||||||    
T  5313252 aagttaaggtttcctttgatcgtctcaacacatttatgcttgatgaagagctgagtaatgatgataatggaagaaatataaagcaatgttcagtcaatgc 5313351  T
Q  108 tgtggagattcaagatggaaactttaattgggatcatggatctatgtctccaaccttaagggatgtaaatttagaaatcaaatggagacagaaaatagca 207  Q
    |||||  || |||| ||| ||||| | ||||||||||| |||| | || | ||| ||||  ||||| || ||||| || |||||| ||||||||||||||    
T  5313352 tgtggtaatccaagctggcaacttcatttgggatcatgaatctgtatcccaaactttaaaagatgtgaacttagagataaaatggggacagaaaatagca 5313451  T
Q  208 gtttgtggaccagttggagctggaaaatcatcacttttgtatgcaatacttggagaaattcccaagattcaaggaactgtaagtta 293  Q
    ||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||  |||||||||||||||    
T  5313452 gtttgcggacctgttggagctggaaaatcatctcttctgtatgcaatacttggagagattcctaagatttcaggaactgtaagtta 5313537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 540 - 736
Target Start/End: Complemental strand, 5351835 - 5351639
Alignment:
Q  540 gcctatgtttctcaatcttcttggatacaaagtggaacagttcaagaaaatatactctttggcaagccaatgcataaaagaagatacgagaaagcaatca 639  Q
    ||||||||||||||| | || |||||||||||||||||| |||  || || ||||||||||| ||   |||| | |  |  ||||| ||||| ||||| |    
T  5351835 gcctatgtttctcaaacatcatggatacaaagtggaacaattcgtgataacatactctttggaaaattaatggaaaggaacagatatgagaatgcaataa 5351736  T
Q  640 aagcttgtgccttagataaggatataaatgattttagccatggtgatcttacagaaatcggtcagagagggattaacatgagcggaggacaaaagca 736  Q
    |||| ||||| || || ||||||||| ||| ||||||||||||||||||||||||||| || ||||||||  ||||| |||| ||||| ||||||||    
T  5351735 aagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttgagtggagggcaaaagca 5351639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 458 - 496
Target Start/End: Original strand, 8536153 - 8536191
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatga 496  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  8536153 tttgttatagaaatagcttatacataagcacttatatga 8536191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 369 - 498
Target Start/End: Original strand, 28769343 - 28769484
Alignment:
Q  369 atgtccataagttcttttcagcttcattctataagttcttcaagatagcttatgaa-------tatagcttacatgaaaacagtttgact--attttat- 458  Q
    ||||||||||||| ||||||||||  ||| ||||  ||| ||| ||||||||||||       ||||||||| | ||||| |||||||||  |||||||     
T  28769343 atgtccataagttgttttcagcttatttccataaactctccaaaatagcttatgaaaacagcttatagcttataagaaaatagtttgacttaattttata 28769442  T
Q  459 --ttgttatagaaatagcttatacataagcacttgtatgata 498  Q
      ||||||||| ||||||||||||||||||| || |||||||    
T  28769443 gtttgttataggaatagcttatacataagcatttatatgata 28769484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 498
Target Start/End: Complemental strand, 8629074 - 8629034
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||||||||||||||||||||| |||||||||| |||||||    
T  8629074 tttgttatagaaatagcttataaataagcacttatatgata 8629034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 399 - 451
Target Start/End: Complemental strand, 11494182 - 11494130
Alignment:
Q  399 ataagttcttcaagatagcttatgaatatagcttacatgaaaacagtttgact 451  Q
    ||||| |||||||||||||||||||| |||| ||| ||||||| |||||||||    
T  11494182 ataagctcttcaagatagcttatgaaaatagtttatatgaaaaaagtttgact 11494130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 498
Target Start/End: Complemental strand, 14482167 - 14482127
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  14482167 tttgttatagaaatagtttatacataagcacttatatgata 14482127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 498
Target Start/End: Complemental strand, 14949853 - 14949813
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||||||||||| ||||||||||||||| ||||||||||||    
T  14949853 tttgttatagaagtagcttatacataagaacttgtatgata 14949813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 498
Target Start/End: Complemental strand, 31884559 - 31884519
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  31884559 tttgttatagaaataacttatacatatgcacttgtatgata 31884519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 425 - 484
Target Start/End: Original strand, 44617856 - 44617918
Alignment:
Q  425 tatagcttacatgaaaacagtttgactattttattt---gttatagaaatagcttatacataa 484  Q
    |||| |||| ||||||||||| | ||||||||||||   ||||||||||||||||||||||||    
T  44617856 tatatcttatatgaaaacagtctaactattttatttttagttatagaaatagcttatacataa 44617918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 456 - 498
Target Start/End: Original strand, 11476990 - 11477032
Alignment:
Q  456 tatttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||| ||||||||||||||||| ||||||| |||||||    
T  11476990 tatttgttacagaaatagcttatacattagcacttatatgata 11477032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 460 - 498
Target Start/End: Complemental strand, 12972819 - 12972781
Alignment:
Q  460 tgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  12972819 tgttattgaaatagcttatacataagcacttatatgata 12972781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 468 - 498
Target Start/End: Original strand, 30172754 - 30172784
Alignment:
Q  468 aaatagcttatacataagcacttgtatgata 498  Q
    |||||||||||||||||||||||||||||||    
T  30172754 aaatagcttatacataagcacttgtatgata 30172784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 326 - 363
Target Start/End: Complemental strand, 1096649 - 1096612
Alignment:
Q  326 ttaaggcatgtttgaattgactcatttgagtttattta 363  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  1096649 ttaaggcatgtttggattgacttatttgagtttattta 1096612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 491
Target Start/End: Complemental strand, 1112818 - 1112785
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttg 491  Q
    ||||||||||||||||| ||||||||||||||||    
T  1112818 tttgttatagaaatagcatatacataagcacttg 1112785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 490
Target Start/End: Complemental strand, 42597404 - 42597334
Alignment:
Q  425 tatagcttacatgaaaacagtttgact--attttat---ttgttatagaaatagcttatacataagcactt 490  Q
    |||||||| |||||||||| ||| |||  |||||||   ||||||||||||||||||||||||||| ||||    
T  42597404 tatagcttgcatgaaaacaattttactttattttatcttttgttatagaaatagcttatacataagtactt 42597334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 1e-64; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 504 - 736
Target Start/End: Complemental strand, 31526684 - 31526451
Alignment:
Q  504 ctataatg-gaaacaggttaatgtaggtggcacacttgcctatgtttctcaatcttcttggatacaaagtggaacagttcaagaaaatatactctttggc 602  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||||||    
T  31526684 ctataatgcgaaacaggttaatgtaggtggcactcttgcctatgtttctcaatcttcatggatacaaagtggaaccgttcgagataatatactctttggc 31526585  T
Q  603 aagccaatgcataaaagaagatacgagaaagcaatcaaagcttgtgccttagataaggatataaatgattttagccatggtgatcttacagaaatcggtc 702  Q
    ||||||||| | |||  |||||| ||||| || || |||||||||||||| ||  | ||||| |||||||| || |||||||||||||||||||| ||||    
T  31526584 aagccaatgaacaaagcaagatatgagaatgctattaaagcttgtgccttggacgaagatatcaatgatttgagtcatggtgatcttacagaaataggtc 31526485  T
Q  703 agagagggattaacatgagcggaggacaaaagca 736  Q
    | |||||||||||| | || ||||||||||||||    
T  31526484 aaagagggattaacctaagtggaggacaaaagca 31526451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 8 - 293
Target Start/End: Complemental strand, 31527058 - 31526770
Alignment:
Q  8 aagttaaggtttcattcgatcgtcttactaattttttgcttgatgaagaactaaacaatgatgata---gtgaaagaaacatacagcaactttcggtcaa 104  Q
    ||||||||||||| || |||||||||| ||| ||||||||||||||||||||  ||||||||||||   |||||| | ||||| ||||   |||    ||    
T  31527058 aagttaaggtttcctttgatcgtcttaataactttttgcttgatgaagaacttcacaatgatgataatagtgaaaaacacataaagcattgttcatctaa 31526959  T
Q  105 tgctgtggagattcaagatggaaactttaattgggatcatggatctatgtctccaaccttaagggatgtaaatttagaaatcaaatggagacagaaaata 204  Q
    ||  ||||| ||||||| ||| ||||| | |||||||| || |||| |||| ||||| ||||  ||||| ||||||||||| ||| || |||||||||||    
T  31526958 tgtcgtggaaattcaagctggcaacttcacttgggatcttgaatctgtgtccccaactttaacagatgttaatttagaaataaaacggggacagaaaata 31526859  T
Q  205 gcagtttgtggaccagttggagctggaaaatcatcacttttgtatgcaatacttggagaaattcccaagattcaaggaactgtaagtta 293  Q
    |||||||||||||| ||||||||||||||||| || ||| ||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  31526858 gcagtttgtggaccggttggagctggaaaatcgtctcttctgtatgcaatactcggagagattccaaatattcaaggaactgtaagtta 31526770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 498
Target Start/End: Original strand, 31668790 - 31668830
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  31668790 tttgttatagaaatagcttatacataagcacttatatgata 31668830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 425 - 498
Target Start/End: Original strand, 10452427 - 10452505
Alignment:
Q  425 tatagcttacatgaaaacagtttgact--attttat---ttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||| ||||||| ||||||| |  |||||||   |||||||||||||||||||||||||||||||  |||||||    
T  10452427 tatagcttatatgaaaatagtttgattttattttatattttgttatagaaatagcttatacataagcactgatatgata 10452505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 425 - 498
Target Start/End: Original strand, 29274296 - 29274374
Alignment:
Q  425 tatagcttacatgaaaacagtttgact--attttat---ttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||| ||||||||| |||||||  |||||||   ||| ||||||||||||||||||||||||| || |||||||    
T  29274296 tatagcttatatgaaaacaatttgactttattttatcttttgctatagaaatagcttatacataagcatttctatgata 29274374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 372 - 494
Target Start/End: Original strand, 2034453 - 2034579
Alignment:
Q  372 tccataagttcttttcagcttcattctataagttcttcaagatagcttatgaatatagcttacatgaaaacagtttgact--attttat--ttgttatag 467  Q
    |||||||| | ||||||||||  |||  |||| ||| || | ||||||||||| | |||||| ||||||  |||||||||  |||||||  ||||| ||     
T  2034453 tccataagctgttttcagcttatttcattaagctctacatgttagcttatgaaaaaagcttatatgaaagtagtttgactttattttatctttgttgtaa 2034552  T
Q  468 aaatagcttatacataagcacttgtat 494  Q
    ||| |||||||||||||||||||||||    
T  2034553 aaacagcttatacataagcacttgtat 2034579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 490
Target Start/End: Original strand, 4247739 - 4247771
Alignment:
Q  458 tttgttatagaaatagcttatacataagcactt 490  Q
    |||||||||||||||||||||||||||||||||    
T  4247739 tttgttatagaaatagcttatacataagcactt 4247771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 498
Target Start/End: Complemental strand, 29249439 - 29249399
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||||||||||||||||| |||||||||||||| |||||||    
T  29249439 tttgttatagaaatagctgatacataagcacttatatgata 29249399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 490
Target Start/End: Complemental strand, 31461643 - 31461611
Alignment:
Q  458 tttgttatagaaatagcttatacataagcactt 490  Q
    |||||||||||||||||||||||||||||||||    
T  31461643 tttgttatagaaatagcttatacataagcactt 31461611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 498
Target Start/End: Complemental strand, 8010321 - 8010282
Alignment:
Q  459 ttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  8010321 ttgttatagaaatagcttatacctaagcacttatatgata 8010282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 424 - 490
Target Start/End: Original strand, 725721 - 725786
Alignment:
Q  424 atatagcttacatgaaaacagtttgactattttatttgttatagaaatagcttatacataagcactt 490  Q
    |||||| ||| || |||||||||||||| |||| || | ||||||||||||| ||||||||||||||    
T  725721 atatagtttatataaaaacagtttgactttttt-ttagctatagaaatagctaatacataagcactt 725786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 461 - 490
Target Start/End: Original strand, 4003708 - 4003737
Alignment:
Q  461 gttatagaaatagcttatacataagcactt 490  Q
    ||||||||||||||||||||||||||||||    
T  4003708 gttatagaaatagcttatacataagcactt 4003737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 495
Target Start/End: Complemental strand, 33259781 - 33259744
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatg 495  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  33259781 tttgttataaaaatagcttatacataagcacttatatg 33259744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 368 - 498
Target Start/End: Complemental strand, 23819156 - 23819015
Alignment:
Q  368 catgtccataagttcttttcagcttcattctataagttcttcaagatagcttatgaa-------tatagcttacatgaaaacagtttgacta----tttt 456  Q
    |||||||||||||| |||||| |||  ||||||||| ||||||||||||||||||||       |||| |||| ||||||||||||||||||    || |    
T  23819156 catgtccataagttgttttcatcttatttctataagctcttcaagatagcttatgaaaacatgttataacttatatgaaaacagtttgactacattttat 23819057  T
Q  457 atttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||| |||||| ||||||||||| |||||||||||||    
T  23819056 atttgttatggaaataacttatacataaacacttgtatgata 23819015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 369 - 498
Target Start/End: Original strand, 22684525 - 22684661
Alignment:
Q  369 atgtccataagttcttttcagcttcattctataagttcttcaagata--gcttatgaatatagcttacatgaaaacagtttgact--atttta---tttg 461  Q
    ||||||||||| | ||||||||||  |||| |||| |||||||||||  ||||||||  | |||||| ||||||||| |||||||  ||||||   ||||    
T  22684525 atgtccataagctgttttcagcttatttctttaagctcttcaagatatagcttatgagaacagcttatatgaaaacaatttgactttattttaccgtttg 22684624  T
Q  462 ttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||||||||||||||||||| ||||| || |||||||    
T  22684625 ttatagaaatagcttatacagaagcatttatatgata 22684661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 498
Target Start/End: Original strand, 2980576 - 2980616
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  2980576 tttgttatagaaatagcttatacataagcacttatatgata 2980616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 498
Target Start/End: Complemental strand, 4191704 - 4191664
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  4191704 tttgttatagaaatagcttatacataagcacttatatgata 4191664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 458 - 496
Target Start/End: Complemental strand, 47970283 - 47970245
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatga 496  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  47970283 tttgttatagaaatagcttatacataagcacttatatga 47970245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 425 - 498
Target Start/End: Original strand, 54325104 - 54325182
Alignment:
Q  425 tatagcttacatgaaaacagtttgac--tatttta---tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||| ||||||||||||||||  |||||||   ||||| |||||||||| ||||||| |||||||| |||||||    
T  54325104 tatagcttatatgaaaacagtttgactttattttatcttttgtaatagaaatagtttatacacaagcacttatatgata 54325182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 417 - 498
Target Start/End: Original strand, 55437345 - 55437429
Alignment:
Q  417 cttatgaatatagcttacatgaaaacagtttgact--attttat-ttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||||||| |||||||| ||||||| | |||||||  ||||||| ||||||||||||||||||||| |||| | ||| |||||||    
T  55437345 cttatgaaaatagcttatatgaaaataatttgactttattttatattgttatagaaatagcttatagataatcgcttatatgata 55437429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 396 - 451
Target Start/End: Original strand, 969358 - 969413
Alignment:
Q  396 tctataagttcttcaagatagcttatgaatatagcttacatgaaaacagtttgact 451  Q
    |||||||||||| || ||||||| ||||| |||||||| ||||||||| |||||||    
T  969358 tctataagttctccacgatagctcatgaaaatagcttatatgaaaacaatttgact 969413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 399 - 490
Target Start/End: Original strand, 4798600 - 4798696
Alignment:
Q  399 ataagttcttcaagatagcttatgaatatagcttacatgaaaacagtttgact--attttat---ttgttatagaaatagcttatacataagcactt 490  Q
    ||||| ||| |||||||||||||||| | | ||| || ||||||| || ||||  |||||||   ||| ||||||||||||||||||||||||||||    
T  4798600 ataagctctccaagatagcttatgaaaacaacttgcaggaaaacatttagactttattttatcttttgatatagaaatagcttatacataagcactt 4798696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 425 - 498
Target Start/End: Original strand, 30207638 - 30207715
Alignment:
Q  425 tatagcttacatgaaaacagtttgact-attttattt---gttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||| ||||||||||||||| | |||||||||   ||||||||| || | ||||||||||||||| |||||||    
T  30207638 tatagcttatatgaaaacagtttgatttattttattttttgttatagaactaacatatacataagcacttatatgata 30207715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 40709448 - 40709517
Alignment:
Q  425 tatagcttacatga-aaacagtttgactattttat---ttgttatagaaatagcttatacataagcactt 490  Q
    |||||||||||| | ||| ||||||||||||||||   |||||||||||| |||||||| ||||||||||    
T  40709448 tatagcttacataagaaaaagtttgactattttatcttttgttatagaaacagcttataaataagcactt 40709517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 435 - 490
Target Start/End: Original strand, 26190173 - 26190230
Alignment:
Q  435 atgaaaacagtttgactattttatt--tgttatagaaatagcttatacataagcactt 490  Q
    ||||||| ||||||||| |||||||  ||||||| ||||||| |||||||||||||||    
T  26190173 atgaaaagagtttgacttttttattgttgttataaaaatagcatatacataagcactt 26190230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 487
Target Start/End: Complemental strand, 24160955 - 24160926
Alignment:
Q  458 tttgttatagaaatagcttatacataagca 487  Q
    ||||||||||||||||||||||||||||||    
T  24160955 tttgttatagaaatagcttatacataagca 24160926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 487
Target Start/End: Original strand, 25487650 - 25487679
Alignment:
Q  458 tttgttatagaaatagcttatacataagca 487  Q
    ||||||||||||||||||||||||||||||    
T  25487650 tttgttatagaaatagcttatacataagca 25487679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 427 - 498
Target Start/End: Complemental strand, 44319950 - 44319875
Alignment:
Q  427 tagcttacatgaaaacagtttgact--attttat--ttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||| |||||||||||| ||||  |||||||  || |||||||||||| |||||||| ||||||| |||||||    
T  44319950 tagcttatatgaaaacagttcgactttattttatcttttttatagaaatagtttatacatgagcacttatatgata 44319875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 8e-20; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 413 - 498
Target Start/End: Complemental strand, 11684436 - 11684348
Alignment:
Q  413 atagcttatgaatatagcttacatgaaaacagtttgactatttta---tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||||||||||| |||||||| ||||||||||||| |||||||||   ||||||||| ||||||||||||||| ||||||| |||||||    
T  11684436 atagcttatgaaaatagcttatatgaaaacagtttcactattttatattttgttataaaaatagcttatacattagcacttatatgata 11684348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 458 - 497
Target Start/End: Original strand, 7096232 - 7096271
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgat 497  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7096232 tttgttatagaaatagcttatacataagcacttgtatgat 7096271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 498
Target Start/End: Complemental strand, 13224394 - 13224354
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  13224394 tttgttatagaaatagcttatacataagcacttctatgata 13224354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 498
Target Start/End: Original strand, 20982240 - 20982280
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  20982240 tttgttatagaaatagcttatacataagcacttatatgata 20982280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 425 - 498
Target Start/End: Original strand, 12407728 - 12407805
Alignment:
Q  425 tatagcttacatgaaaacagtttgact--attttat---ttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||| ||||||||||||||| || |||  |||||||   |||||||||||||||||||||||||| |||||||||||||    
T  12407728 tataacttacatgaaaacagatttactttattttatcttttgttatagaaatagcttatacataa-cacttgtatgata 12407805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 498
Target Start/End: Complemental strand, 26516263 - 26516223
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  26516263 tttgttttagaaatagcttatacataagcacttatatgata 26516223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 498
Target Start/End: Original strand, 29115318 - 29115358
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  29115318 tttgttgtagaaatagcttatacataagcacttttatgata 29115358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 490
Target Start/End: Complemental strand, 29588845 - 29588813
Alignment:
Q  458 tttgttatagaaatagcttatacataagcactt 490  Q
    |||||||||||||||||||||||||||||||||    
T  29588845 tttgttatagaaatagcttatacataagcactt 29588813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 425 - 498
Target Start/End: Original strand, 32059656 - 32059733
Alignment:
Q  425 tatagcttacatgaaaacagtttgac--tatttta--tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||| ||||||||||||||||  |||||||  || |||| | ||| ||||||||||||||||||| |||||||    
T  32059656 tatagcttatatgaaaacagtttgactttattttatcttagttacaaaaacagcttatacataagcacttatatgata 32059733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 413 - 495
Target Start/End: Original strand, 35135714 - 35135804
Alignment:
Q  413 atagcttatgaa---tatagcttacatgaaaacagtttgact--attttat---ttgttatagaaatagcttatacataagcacttgtatg 495  Q
    ||||||||||||   ||||||||| ||||||| |||||||||  |||||||   |||||||||||||| ||||||||||| ||||| ||||    
T  35135714 atagcttatgaaacttatagcttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttatacataaacacttatatg 35135804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 459 - 497
Target Start/End: Original strand, 10798510 - 10798548
Alignment:
Q  459 ttgttatagaaatagcttatacataagcacttgtatgat 497  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  10798510 ttgtcatagaaatagcttatacataagcacttatatgat 10798548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 16945050 - 16945118
Alignment:
Q  425 tatagcttacatgaaaacagtttgactattttat---ttgttatagaaatagcttatacataagcactt 490  Q
    ||||||||  ||||||||| ||| ||||||||||   || || ||||||||||||||||||||||||||    
T  16945050 tatagcttctatgaaaacaatttaactattttatcttttcttgtagaaatagcttatacataagcactt 16945118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 370 - 424
Target Start/End: Complemental strand, 18906407 - 18906353
Alignment:
Q  370 tgtccataagttcttttcagcttcattctataagttcttcaagatagcttatgaa 424  Q
    |||||||||||| ||||||||||  ||| ||||| | ||||||||||||||||||    
T  18906407 tgtccataagttgttttcagcttatttcgataagcttttcaagatagcttatgaa 18906353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 498
Target Start/End: Complemental strand, 19177482 - 19177404
Alignment:
Q  425 tatagcttacatgaaaacagtttgact--atttta---tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||| |||||||||||| ||||  ||||||   | |||| ||||||||| |||||||||||||||| |||||||    
T  19177482 tatagcttatatgaaaacagttagacttaattttatcttctgttgtagaaatagtttatacataagcacttatatgata 19177404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 368 - 433
Target Start/End: Original strand, 28409368 - 28409433
Alignment:
Q  368 catgtccataagttcttttcagcttcattctataagttcttcaagatagcttatgaatatagctta 433  Q
    |||||||||||||| ||||||||||  ||||| ||||||| |  |||||||||| || ||||||||    
T  28409368 catgtccataagttattttcagcttatttctacaagttctccgggatagcttataaaaatagctta 28409433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 490
Target Start/End: Original strand, 31030232 - 31030265
Alignment:
Q  457 atttgttatagaaatagcttatacataagcactt 490  Q
    |||||||||| |||||||||||||||||||||||    
T  31030232 atttgttataaaaatagcttatacataagcactt 31030265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 462 - 499
Target Start/End: Original strand, 38813202 - 38813239
Alignment:
Q  462 ttatagaaatagcttatacataagcacttgtatgatac 499  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  38813202 ttattgaaatagtttatacataagcacttgtatgatac 38813239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 498
Target Start/End: Original strand, 40499779 - 40499820
Alignment:
Q  457 atttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||||||||||||||| ||| ||||||||||||| |||||||    
T  40499779 atttgttatagaaataacttgtacataagcacttatatgata 40499820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 453 - 490
Target Start/End: Complemental strand, 42849934 - 42849897
Alignment:
Q  453 ttttatttgttatagaaatagcttatacataagcactt 490  Q
    |||||| | |||||||||||||||||||||||||||||    
T  42849934 ttttatatattatagaaatagcttatacataagcactt 42849897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 368 - 484
Target Start/End: Complemental strand, 39345538 - 39345422
Alignment:
Q  368 catgtccataagttcttttcagcttcattctataagttcttcaagatagcttatgaatatagcttacatgaaaacagtttgactattttatttgttatag 467  Q
    ||||||||||||||  |||||||||  ||| ||||| || ||| |||||||| |||| | |||||| ||||||||||||||||| | |  |||||||  |    
T  39345538 catgtccataagttgctttcagcttatttccataaggtcgtcaggatagcttttgaaaacagcttatatgaaaacagtttgactctatcttttgttactg 39345439  T
Q  468 aaatagcttatacataa 484  Q
    |||||||||||||||||    
T  39345438 aaatagcttatacataa 39345422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 428 - 490
Target Start/End: Complemental strand, 33894622 - 33894556
Alignment:
Q  428 agcttacatgaaaacagtttgact-attttat---ttgttatagaaatagcttatacataagcactt 490  Q
    |||||| ||||||||||||||||| |||||||   ||||||||||||||||||||||||||||||||    
T  33894622 agcttatatgaaaacagtttgacttattttatcttttgttatagaaatagcttatacataagcactt 33894556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 498
Target Start/End: Complemental strand, 7244667 - 7244627
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||| |||||||||||||||||||||||||||| |||||||    
T  7244667 tttgatatagaaatagcttatacataagcacttatatgata 7244627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 425 - 489
Target Start/End: Complemental strand, 24909667 - 24909603
Alignment:
Q  425 tatagcttacatgaaaacagtttgactattttatttgttatagaaatagcttatacataagcact 489  Q
    ||||||||| ||||||| | ||||||| |  | ||||||| ||||||||||||||||||||||||    
T  24909667 tatagcttatatgaaaataatttgactttactttttgttaaagaaatagcttatacataagcact 24909603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 498
Target Start/End: Complemental strand, 45078258 - 45078218
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||| ||||||||||||||||||||||| |||||||    
T  45078258 tttgttataaaaatagcttatacataagcacttatatgata 45078218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 430 - 498
Target Start/End: Original strand, 45593791 - 45593864
Alignment:
Q  430 cttacatgaaaacagtttgact--attttat---ttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||| |||||||||||||||||  |||||||   |||||| |||||||||||||||||||||| || |||||||    
T  45593791 cttatatgaaaacagtttgactttattttatgttttgttacagaaatagcttatacataagcatttatatgata 45593864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 498
Target Start/End: Complemental strand, 46213768 - 46213728
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||||||||||||| ||||||||||||| |||||||    
T  46213768 tttgttatagaaatagcttttacataagcacttatatgata 46213728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 490
Target Start/End: Complemental strand, 941532 - 941477
Alignment:
Q  436 tgaaaacagtttgactattttatt-tgttatagaaatagcttatacataagcactt 490  Q
    |||||||| ||||||||||| ||| |||||||||||||||||||| ||| ||||||    
T  941532 tgaaaacaatttgactatttaattgtgttatagaaatagcttatatatatgcactt 941477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 458 - 497
Target Start/End: Complemental strand, 24973909 - 24973870
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgat 497  Q
    ||||||||||||||||||| ||||||||||||| ||||||    
T  24973909 tttgttatagaaatagcttttacataagcacttatatgat 24973870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 458 - 496
Target Start/End: Original strand, 3610845 - 3610883
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatga 496  Q
    |||||| |||||||||||||||||||||||||| |||||    
T  3610845 tttgttgtagaaatagcttatacataagcacttatatga 3610883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 5369758 - 5369826
Alignment:
Q  425 tatagcttacatgaaaacagtttgactatttta---tttgttatagaaatagcttatacataagcactt 490  Q
    |||||| || ||||||||||||||||| | |||   ||| |||||||| ||||||||||||||||||||    
T  5369758 tatagcatatatgaaaacagtttgactttattaattttttttatagaattagcttatacataagcactt 5369826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 457 - 498
Target Start/End: Original strand, 5628670 - 5628711
Alignment:
Q  457 atttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||||||||| ||||||||||| ||||||| |||||||||||    
T  5628670 atttgttataaaaatagcttatgcataagcccttgtatgata 5628711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 413 - 498
Target Start/End: Original strand, 33267571 - 33267661
Alignment:
Q  413 atagcttatgaatatagcttacatgaaaacagtttgact--atttta---tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||| || | |||||| ||||||||||||| |||  ||||||   |||||||||||||||| |||||||||||||||| |||||||    
T  33267571 atagcttataaaaacagcttatatgaaaacagtttaactttattttactgtttgttatagaaatagattatacataagcacttatatgata 33267661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 425 - 498
Target Start/End: Complemental strand, 29430758 - 29430681
Alignment:
Q  425 tatagcttacatgaaaacagtttgactat-ttta---tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||| | ||||||||||||||| | ||||   ||||||||||||||||||||||||||| | |||||||||||    
T  29430758 tatagcttataagaaaacagtttgactttatttaacttttgttatagaaatagcttatacataaacccttgtatgata 29430681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 425 - 490
Target Start/End: Complemental strand, 10143175 - 10143105
Alignment:
Q  425 tatagcttacatgaaaacagtttgact--attttat---ttgttatagaaatagcttatacataagcactt 490  Q
    ||||||||| || ||||||||||||||  |||||||   |||||||||||||| |||||||||||||||||    
T  10143175 tatagcttatataaaaacagtttgacttaattttatcttttgttatagaaataacttatacataagcactt 10143105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 433
Target Start/End: Original strand, 29316778 - 29316843
Alignment:
Q  368 catgtccataagttcttttcagcttcattctataagttcttcaagatagcttatgaatatagctta 433  Q
    ||||| |||||||||||||||||||  ||| ||||||||| |||||||||| ||||| | ||||||    
T  29316778 catgttcataagttcttttcagcttatttccataagttctccaagatagctgatgaaaacagctta 29316843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 425 - 498
Target Start/End: Complemental strand, 37053597 - 37053519
Alignment:
Q  425 tatagcttacatgaaaacagtttgact--attttattt---gttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||| |||| |||||||||||||||||  |||||||||   |||||||||||||  ||||||||||||||| |||||||    
T  37053597 tataacttatatgaaaacagtttgactttattttattttctgttatagaaatagtctatacataagcacttatatgata 37053519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 383 - 435
Target Start/End: Original strand, 1056371 - 1056423
Alignment:
Q  383 ttttcagcttcattctataagttcttcaagatagcttatgaatatagcttaca 435  Q
    ||||||||||  ||||||||  |||||||||||||||||||| ||||||||||    
T  1056371 ttttcagcttatttctataaactcttcaagatagcttatgaaaatagcttaca 1056423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 498
Target Start/End: Original strand, 33197344 - 33197384
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||||||||||||||||||||| |||||||||| |||||||    
T  33197344 tttgttatagaaatagcttatagataagcacttatatgata 33197384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 35755569 - 35755639
Alignment:
Q  425 tatagcttacatgaaaacagtttgact--atttt--atttg-ttatagaaatagcttatacataagcactt 490  Q
    ||||||||||||||||||| |||||||  |||||  ||||| ||||||||||||||||||||||| |||||    
T  35755569 tatagcttacatgaaaacaatttgactttattttctatttgattatagaaatagcttatacataaacactt 35755639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 490
Target Start/End: Original strand, 41033055 - 41033087
Alignment:
Q  458 tttgttatagaaatagcttatacataagcactt 490  Q
    |||||||||||||||||||||||||||||||||    
T  41033055 tttgttatagaaatagcttatacataagcactt 41033087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 498
Target Start/End: Original strand, 17952770 - 17952846
Alignment:
Q  427 tagcttacatgaaaacagtttgact--attttat---ttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||| ||||||| |||||||||  |||||||   ||||||||||||||||||||| |||||| ||| |||||||    
T  17952770 tagcttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttatatataagctcttatatgata 17952846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 460 - 498
Target Start/End: Complemental strand, 9478262 - 9478224
Alignment:
Q  460 tgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  9478262 tgttatagaaatagcttatacataaacacttatatgata 9478224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 458 - 496
Target Start/End: Complemental strand, 13864615 - 13864577
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatga 496  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  13864615 tttgttatagaaatagcttatacataaacacttatatga 13864577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 457 - 491
Target Start/End: Original strand, 30990473 - 30990507
Alignment:
Q  457 atttgttatagaaatagcttatacataagcacttg 491  Q
    |||||||||||||| ||||||||||||||||||||    
T  30990473 atttgttatagaaagagcttatacataagcacttg 30990507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 487
Target Start/End: Complemental strand, 5133737 - 5133708
Alignment:
Q  458 tttgttatagaaatagcttatacataagca 487  Q
    ||||||||||||||||||||||||||||||    
T  5133737 tttgttatagaaatagcttatacataagca 5133708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 18962105 - 18962175
Alignment:
Q  425 tatagcttacatgaaaacagtttgact--attttat---ttgttatagaaatagcttatacataagcactt 490  Q
    ||||||||| ||||||||||||| |||  |||||||   |||||||| |||||||| ||||||||||||||    
T  18962105 tatagcttatatgaaaacagtttaactttattttatcttttgttataaaaatagctaatacataagcactt 18962175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 498
Target Start/End: Original strand, 1179 - 1219
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  1179 tttgttatagaaatagcttatacataagcacttatatgata 1219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 498
Target Start/End: Complemental strand, 2796 - 2756
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  2796 tttgttatagaaatagcttatacataagcacttatatgata 2756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 498
Target Start/End: Original strand, 41028956 - 41028996
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  41028956 tttgttatagaaatagcttatacataagcacttatatgata 41028996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 425 - 485
Target Start/End: Complemental strand, 20669622 - 20669562
Alignment:
Q  425 tatagcttacatgaaaacagtttgactattttatttgttatagaaatagcttatacataag 485  Q
    ||||||||| ||||||||| ||| |||  | | ||||||||||||||||||||||||||||    
T  20669622 tatagcttatatgaaaacaatttaacttgtatttttgttatagaaatagcttatacataag 20669562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 498
Target Start/End: Original strand, 24268260 - 24268300
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||| ||||||||||| ||||||||||||||||||||||||    
T  24268260 tttgctatagaaatagtttatacataagcacttgtatgata 24268300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 368 - 424
Target Start/End: Complemental strand, 37273201 - 37273145
Alignment:
Q  368 catgtccataagttcttttcagcttcattctataagttcttcaagatagcttatgaa 424  Q
    |||||||||||||| |||||| |||  ||| ||||||||| ||||||||||||||||    
T  37273201 catgtccataagttgttttcaacttatttccataagttctccaagatagcttatgaa 37273145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 498
Target Start/End: Original strand, 43116533 - 43116573
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||||||||||||||||||| |||||| |||||||||||||    
T  43116533 tttgttatagaaatagcttacacataaacacttgtatgata 43116573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 426 - 502
Target Start/End: Original strand, 49586984 - 49587064
Alignment:
Q  426 atagcttacatgaaaacagtttgac--tatttta---tttgttatagaaatagcttatacataagcacttgtatgatacttt 502  Q
    |||||||| ||||||||||||||||  |||||||   ||||||||||||||||||||||  ||||||||| |||| ||||||    
T  49586984 atagcttatatgaaaacagtttgactttattttatcttttgttatagaaatagcttata-gtaagcacttatatggtacttt 49587064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 498
Target Start/End: Original strand, 16790462 - 16790501
Alignment:
Q  459 ttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||||||| ||||||||||||||||||||||| |||||||    
T  16790462 ttgttataaaaatagcttatacataagcacttatatgata 16790501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 457 - 496
Target Start/End: Original strand, 24158606 - 24158645
Alignment:
Q  457 atttgttatagaaatagcttatacataagcacttgtatga 496  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  24158606 atttgttatagaaataacttatacataagcacttatatga 24158645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 498
Target Start/End: Complemental strand, 48528542 - 48528503
Alignment:
Q  459 ttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  48528542 ttgttatagaaatagcttatacataagtacttatatgata 48528503  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 425 - 495
Target Start/End: Original strand, 8007762 - 8007837
Alignment:
Q  425 tatagcttacatgaaaacagtttgactat--tttat---ttgttatagaaatagcttatacataagcacttgtatg 495  Q
    ||||||||| |||| |||||||||||| |  |||||   |||||||||||| ||||||||||||||| ||||||||    
T  8007762 tatagcttatatgataacagtttgactttactttatcttttgttatagaaacagcttatacataagcccttgtatg 8007837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 428 - 498
Target Start/End: Complemental strand, 27792872 - 27792797
Alignment:
Q  428 agcttacatgaaaacagtttgac--tattttat---ttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||||| ||||||| ||||||||  ||||||||   ||||| | |||||||||||||||||||||||| |||||||    
T  27792872 agcttatatgaaaatagtttgaccttattttatcttttgtttttgaaatagcttatacataagcacttatatgata 27792797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 496
Target Start/End: Original strand, 11039425 - 11039458
Alignment:
Q  463 tatagaaatagcttatacataagcacttgtatga 496  Q
    ||||| ||||||||||||||||||||||||||||    
T  11039425 tataggaatagcttatacataagcacttgtatga 11039458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 490
Target Start/End: Original strand, 20192673 - 20192743
Alignment:
Q  425 tatagcttacatgaaaacagtttgact--attttat---ttgttatagaaatagcttatacataagcactt 490  Q
    ||||| ||| |||||||| ||||||||  |||||||   |||||||| |||||||||||||||||||||||    
T  20192673 tatagattatatgaaaactgtttgactttattttatcttttgttatataaatagcttatacataagcactt 20192743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 436 - 489
Target Start/End: Original strand, 23808308 - 23808366
Alignment:
Q  436 tgaaaacagtttgact--attttatt---tgttatagaaatagcttatacataagcact 489  Q
    ||||||||||||||||  ||||||||   | ||||||||||||||||||||||||||||    
T  23808308 tgaaaacagtttgacttaattttattctctattatagaaatagcttatacataagcact 23808366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 499
Target Start/End: Complemental strand, 24413649 - 24413608
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgatac 499  Q
    |||||||||||||||||| |||| ||||||||| ||||||||    
T  24413649 tttgttatagaaatagctcatacgtaagcacttatatgatac 24413608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 498
Target Start/End: Complemental strand, 38462284 - 38462206
Alignment:
Q  425 tatagcttacatgaaaacagtttgact--attttat---ttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||||| || |||||||||||||||||  |||||||   ||| ||||||||||||||||| |||| ||||| |||||||    
T  38462284 tatagcatatatgaaaacagtttgactttattttatcttttggtatagaaatagcttataaataaacacttatatgata 38462206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 458 - 496
Target Start/End: Complemental strand, 13037829 - 13037791
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatga 496  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  13037829 tttgttatagaaatagcttatacataagcacttatatga 13037791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 498
Target Start/End: Original strand, 24146364 - 24146404
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||||||||| |||||||||||||||||| ||||||    
T  24146364 tttgttatagaaataacttatacataagcacttgcatgata 24146404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 498
Target Start/End: Complemental strand, 35350586 - 35350546
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  35350586 tttgttatagaaatagcttataaataagaacttgtatgata 35350546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 425 - 490
Target Start/End: Complemental strand, 15579485 - 15579416
Alignment:
Q  425 tatagcttacatgaaaacagtttgact-atttta---tttgttatagaaatagcttatacataagcactt 490  Q
    ||||||||||||||||||| ||||| | |||| |   || ||||||||||||||||||||||||||||||    
T  15579485 tatagcttacatgaaaacaatttgatttatttgaactttagttatagaaatagcttatacataagcactt 15579416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 374 - 433
Target Start/End: Complemental strand, 34290297 - 34290238
Alignment:
Q  374 cataagttcttttcagcttcattctataagttcttcaagatagcttatgaatatagctta 433  Q
    |||||||| ||||||||||  ||  |||||||||||||||||||||||||| | ||||||    
T  34290297 cataagttgttttcagcttattttcataagttcttcaagatagcttatgaaaacagctta 34290238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 498
Target Start/End: Original strand, 44032002 - 44032144
Alignment:
Q  368 catgtccataagttcttttcagcttcattctataagttcttcaagatagcttatgaa-------tatagcttacatgaaaacagtttgact--atttta- 457  Q
    |||||||||||| | |||||||||   ||| ||||| ||||||||||| |||| |||       ||||||||| ||||||||| |||||||  ||||||     
T  44032002 catgtccataagctattttcagctaatttccataagctcttcaagataacttaagaaaatagtttatagcttatatgaaaacaatttgactttattttag 44032101  T
Q  458 --tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
      |||||||||||||  |||||||||||| ||||| |||||||    
T  44032102 cttttgttatagaaacggcttatacataaacacttatatgata 44032144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 425 - 498
Target Start/End: Complemental strand, 45107625 - 45107548
Alignment:
Q  425 tatagcttacatgaaaacagtttgact--attttatttgt--tatagaaatagcttatacataagcacttgtatgata 498  Q
    |||| |||| ||||||| |||||||||  ||||||||| |  ||||||||||||||||| |||||||||| |||||||    
T  45107625 tataacttatatgaaaatagtttgactttattttatttttcttatagaaatagcttatagataagcacttatatgata 45107548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 425 - 491
Target Start/End: Complemental strand, 15360897 - 15360826
Alignment:
Q  425 tatagcttacatgaaaacagtttgac--tatttta---tttgttatagaaatagcttatacataagcacttg 491  Q
    ||||||||| ||||||||||||||||  |||||||   ||||||||||||||| || |||||||| ||||||    
T  15360897 tatagcttatatgaaaacagtttgactttattttatcttttgttatagaaataactaatacataaacacttg 15360826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 460 - 490
Target Start/End: Complemental strand, 39339886 - 39339856
Alignment:
Q  460 tgttatagaaatagcttatacataagcactt 490  Q
    |||||||||||||||||||||||||||||||    
T  39339886 tgttatagaaatagcttatacataagcactt 39339856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 463 - 492
Target Start/End: Complemental strand, 488961 - 488932
Alignment:
Q  463 tatagaaatagcttatacataagcacttgt 492  Q
    ||||||||||||||||||||||||||||||    
T  488961 tatagaaatagcttatacataagcacttgt 488932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 487
Target Start/End: Complemental strand, 2462932 - 2462903
Alignment:
Q  458 tttgttatagaaatagcttatacataagca 487  Q
    ||||||||||||||||||||||||||||||    
T  2462932 tttgttatagaaatagcttatacataagca 2462903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 490
Target Start/End: Complemental strand, 5160397 - 5160342
Alignment:
Q  438 aaaacagtttgactattttat---ttgttatagaaatagcttatacataagcactt 490  Q
    |||||||||||||| | ||||   |||||||||||||||||||||||||| |||||    
T  5160397 aaaacagtttgactttattatatgttgttatagaaatagcttatacataaacactt 5160342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 451 - 492
Target Start/End: Complemental strand, 6292465 - 6292424
Alignment:
Q  451 tattttatttgttatagaaatagcttatacataagcacttgt 492  Q
    |||||| |||||||||||||| ||||||||| ||||||||||    
T  6292465 tattttttttgttatagaaatggcttatacagaagcacttgt 6292424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 375 - 424
Target Start/End: Original strand, 12564509 - 12564558
Alignment:
Q  375 ataagttcttttcagcttcattctataagttcttcaagatagcttatgaa 424  Q
    ||||||| ||||||||||  ||| ||||||||| ||||||||||||||||    
T  12564509 ataagttgttttcagcttatttccataagttctccaagatagcttatgaa 12564558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 498
Target Start/End: Original strand, 30259554 - 30259632
Alignment:
Q  425 tatagcttacatgaaaacagtttgact--attttat---ttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||| || ||| ||||||||||  |||||||   |||||||||||||||||| | ||||||||||| |||||||    
T  30259554 tatagcttatatcaaagcagtttgactttattttatattttgttatagaaatagcttgtgcataagcacttctatgata 30259632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 383 - 424
Target Start/End: Original strand, 37842373 - 37842414
Alignment:
Q  383 ttttcagcttcattctataagttcttcaagatagcttatgaa 424  Q
    ||||||||||  || |||||||||||||||||||||||||||    
T  37842373 ttttcagcttatttttataagttcttcaagatagcttatgaa 37842414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 458 - 495
Target Start/End: Complemental strand, 41638214 - 41638177
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatg 495  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  41638214 tttgttatagaaatagctaatacataagcacttatatg 41638177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 465 - 498
Target Start/End: Complemental strand, 42550199 - 42550166
Alignment:
Q  465 tagaaatagcttatacataagcacttgtatgata 498  Q
    ||||| ||||||||||||||||||||||||||||    
T  42550199 tagaactagcttatacataagcacttgtatgata 42550166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 425 - 498
Target Start/End: Complemental strand, 44422702 - 44422626
Alignment:
Q  425 tatagcttacatgaaaacagtttgac--tattttatt-tgttatagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||| |||||||||||||||   ||||||||  ||||||| ||||||||||||||| ||  |||||||||||    
T  44422702 tatagcttatatgaaaacagtttgagattattttatcatgttataaaaatagcttatacatgagtccttgtatgata 44422626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 461 - 498
Target Start/End: Complemental strand, 46712335 - 46712298
Alignment:
Q  461 gttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  46712335 gttatagaaatagcttatacctaagcacttgtgtgata 46712298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 465 - 498
Target Start/End: Original strand, 50764486 - 50764519
Alignment:
Q  465 tagaaatagcttatacataagcacttgtatgata 498  Q
    ||||||||||||||||||||||| ||||||||||    
T  50764486 tagaaatagcttatacataagcaattgtatgata 50764519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 498
Target Start/End: Original strand, 6742 - 6782
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  6742 tttgttatagaaatagtttatacataagcacttatatgata 6782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 458 - 498
Target Start/End: Original strand, 116661 - 116701
Alignment:
Q  458 tttgttatagaaatagcttatacataagcacttgtatgata 498  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  116661 tttgttatagaaatagtttatacataagcacttatatgata 116701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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