View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0979-INSERTION-3 (Length: 663)

Name: NF0979-INSERTION-3
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0979-INSERTION-3
NF0979-INSERTION-3
[»] chr4 (1 HSPs)
chr4 (8-663)||(44603768-44604428)


Alignment Details
Target: chr4 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 8 - 663
Target Start/End: Complemental strand, 44604428 - 44603768
Alignment:
Q  8 agaagtgtaattacggtgacttaccatgcatgattctgtcaaacacacactgtgataaatgacagacaattcaatttgttatttgttcttgaaaacttct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44604428 agaagtgtaattacggtgacttaccatgcatgattctgtcaaacacacactgtgataaatgaaagacaattcaatttgttatttgttcttgaaaacttct 44604329  T
Q  108 ttatgaagcctttatatatgctgttctccatttccgttattgcaacgaccacattcgtttgttaaaattattatgttttgtacaaaactggtaacgaact 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44604328 ttatgaagcctttatatatgctgttctccatttccgttattgcaacgaccacattcgtttgttaaaattattatgttttgtacaaaactggtaacgaact 44604229  T
Q  208 tgactttt-gattgaggcccacaattaagtactatattttgtctagtgctatagttttttcatgattcatctagaacctgggaaattgcgacgtacgtga 306  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44604228 tgactttttgattgaggcccacaattaagtactatattttgtctagtgctatagttttttcatgattcatctagaacctgggaaattgcgacgtacgtga 44604129  T
Q  307 actacccacatgatataacaaaacaacactctccttaaaatgaatttgaatttatgtacttttgatttaat----ttaagatatatcgaaatattagctt 402  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    |||||||||||||||||||||||||    
T  44604128 actacccacatgacataacaaaacaacactctccttaaaatgaatttgaatttatgtacttttgatttattaattttaagatatatcgaaatattagctt 44604029  T
Q  403 attaaaattcattcataataatattacatgtttttgtttttgagtttcattacatgtgtcaaaaataaatatttacaagtatttgtcttatagtctaaat 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  44604028 attaaaattcattcataataatattacatgtttttgtttttgagtttcattacatgtgtcaaaattaaatatttacaagtatttgtcttattgtctaaat 44603929  T
Q  503 tgtacagtgtagaattaagactcaagagtttgtgatattcgcaaaatattcgccactggtcactgaaataacatccaaaacgccagtggcgacaaagctc 602  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44603928 tgtacagtgtagaattaagattcaaaagtttgtgatattcgcaaaatattcgccactggtcactgaaataacatccaaaacgccagtggcgacaaagctc 44603829  T
Q  603 atgtgcaggtatatcaagaatatgcaattcaataatggctacctttggctatatgtatgtg 663  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44603828 atgtgcaggtatatcaagaatatgcaattcaataatggctacctttggctatatgcatgtg 44603768  T

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