View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0979-INSERTION-31 (Length: 705)
Name: NF0979-INSERTION-31
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-31 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 7 - 361
Target Start/End: Complemental strand, 41852004 - 41851650
Alignment:
| Q |
7 |
agaaaagaaaactaacttgtggcaccaacaaatgcgagcaaaaagtagaaaccgaagagggtgaggttaggagaagtttttgatttggtaatgaagtaca |
106 |
Q |
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| T |
41852004 |
agaaaagaaaactaacttgtggcaccaacaaatgcgagcaaaaagtagaaaccgaagagggtgaggttaggagaagtttttgatttggtaatgaagtaca |
41851905 |
T |
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| Q |
107 |
agaaaccaatataaggaaacaaagaaaacgcgaaaagttgagaagctatgctctgtgaatcaatggaaggtgcccatggatcaacacccagtggcaaccc |
206 |
Q |
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| T |
41851904 |
agaaaccaatgtaaggaaacaaagaaaaagcgaaaagttgagaagctatgctctgtgaatcaatggaaggtgcccatggatcaacacccagtggcaaccc |
41851805 |
T |
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| Q |
207 |
acacacgataactgctctctttctaaggctgtttggttctctaattgttctgatgctgattaaatgaaaatcacgttgcaggaaggtagttgaaggtttg |
306 |
Q |
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| T |
41851804 |
acacacgataactgctctctttctaaggctgtttgattctctaattgttctgatgctgattaaatgaaaatcacgttgcaggaaggtagttgaaggtttg |
41851705 |
T |
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| Q |
307 |
ataaatttaggggatttacagagagatagaacaggtaagtttaaagcagaagaag |
361 |
Q |
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| T |
41851704 |
ataaatttaggggatttacagagagatagaacaggtaagtttaaagcagaagaag |
41851650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 448 - 705
Target Start/End: Complemental strand, 41851568 - 41851315
Alignment:
| Q |
448 |
ggaaccgctcaatctgattctcaaacgggctggctgggccactatagcctaaaccaataacatcaagcctagtcaaaacttactcagtaaaccccttgaa |
547 |
Q |
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| T |
41851568 |
ggaaccgctcaatctgattctcaaacgggctggctgggccactatagcctaaaccaataacatcaagcctagtcaaaacttactcagtaaaccccttgaa |
41851469 |
T |
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| Q |
548 |
atgctcacatgcccctcaaattttcaaaaatgcctctcgagacctaactaactgtcctgagcatagaagcaaaacacaggacaccagcagaacggaagta |
647 |
Q |
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| T |
41851468 |
atgcttacatgcccctcaaattttcaaaaatgcctctcgagacct----aactgtcctgagcatagaagcaaaacacaggacaccagcagaacggaagta |
41851373 |
T |
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| Q |
648 |
acaacatttggcataacatgctcaaagctcaaacacattgaacacttaaaattcattc |
705 |
Q |
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| T |
41851372 |
acaacatttggcataacatgctcaaagctcaaacacattgaacacttaaaattcattc |
41851315 |
T |
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