View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0979-INSERTION-32 (Length: 608)
Name: NF0979-INSERTION-32
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-32 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 7 - 558
Target Start/End: Complemental strand, 31085864 - 31085317
Alignment:
| Q |
7 |
acacataagcgatgttgctgcattatttcttctctttccctttcttgagccttttacaatgctttcatttttagctactaacctacattgacataatact |
106 |
Q |
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| T |
31085864 |
acacataagtgatgttgctgcattatttcttctctttcgctttcttgagccctttaccatgctttcatgtttagctactaacctacattgacataatact |
31085765 |
T |
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| Q |
107 |
catgcaaggatcagtacttcatatcttatgagctacaatattgcatttgttccatctagatattaattaaaggcttaattctcatnnnnnnnnnnnnnnc |
206 |
Q |
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| T |
31085764 |
catgcaaggatcagtacttcatatcttatgagctacaatattgcatttgttccatctagatattaattaaaggattaattctcataaaaaaaaatt---- |
31085669 |
T |
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| Q |
207 |
tattcaaaacaattaaaggattaattatccatttgcaattacgagcaggacatgatattggccgccacttttctcagcggcatcccctcatttgtggcaa |
306 |
Q |
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| T |
31085668 |
tattcaaaacaattaaaggattaattatccatttgcaattacgagcaggacatgatattggccgccacttttctcagcgacatcccctcatttgtggcaa |
31085569 |
T |
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| Q |
307 |
gatttgcatcagtttctttcttggtaaattattcctcattctcctcctcaaatatttgtgaagtctccaaccaatctaaaatatggaggatggaaaattc |
406 |
Q |
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| T |
31085568 |
gatttgcatcagtttctttcttggtaaattattcctcattctcctccttaaatatttgtaaagtctctaaccaatccaaaatatggaggatggaaaattc |
31085469 |
T |
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| Q |
407 |
agctgctgaatgagttattctttgcctttgaagtcaacaaattatgcaaattccgatccttccatcgcaacagcaggataaattcttatgggtggtgaat |
506 |
Q |
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| T |
31085468 |
agctgctgaatgagttattctttgcatttgaagtcaacaaattatgcaaattccgatccttccatcgcaacagcaggataaattcttatgggtggtgaat |
31085369 |
T |
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| Q |
507 |
aaaaaatgtgaattctcggtaaaatcagcatacaagtttcttaatgagttct |
558 |
Q |
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| T |
31085368 |
aaaaaatgtgaattctcggtaaaatcggcatacaagtttcttaatgagttct |
31085317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 69 - 97
Target Start/End: Complemental strand, 31056395 - 31056367
Alignment:
| Q |
69 |
tttcatttttagctactaacctacattga |
97 |
Q |
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| T |
31056395 |
tttcatttttagctactaacctacattga |
31056367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 484 - 550
Target Start/End: Complemental strand, 47489727 - 47489661
Alignment:
| Q |
484 |
ataaattcttatgggtggtgaataaaaaatgtgaattctcggtaaaatcagcatacaagtttcttaa |
550 |
Q |
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| T |
47489727 |
ataaattcttatgggtggtgaatgaaaaatgtgtattctcagtaaaatcggtgtacaagtttcttaa |
47489661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 6407 - 6484
Alignment:
| Q |
56 |
ccttttacaatgctttcatttttagctactaacctacattgacataatactcatgcaaggatcagtacttcatatctt |
133 |
Q |
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| T |
6407 |
ccttttaccatgttttcatttttagctactaacctacaatgaaatgattctgatgcaagcattggtacttcttatctt |
6484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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