View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0979-INSERTION-33 (Length: 670)
Name: NF0979-INSERTION-33
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-33 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 7 - 511
Target Start/End: Complemental strand, 14050609 - 14050108
Alignment:
| Q |
7 |
aatgcacacacataaatcatgtttaacaatctctatgggtatatgctctacttttttgttgataatgaactctgggctagattttatacttaaatcagaa |
106 |
Q |
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| T |
14050609 |
aatgcacacacataaatcatgtttaacaatctctatgggtatatgctctacttttttgttgataatgaaccctgagccatattttatacttacatcagaa |
14050510 |
T |
|
| Q |
107 |
agaggaaaacacttcgaaaagatccatacgttaggttgtagatcaacaactcaacataaataaggctgcaaaaccaagaccaaaatacatcccccatcaa |
206 |
Q |
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| T |
14050509 |
aaaggaaaacacttcggaaagatccatacattagactgcagatcaacaactcaacataaataaggcagcaaaaccaagaccaaaatacatcccccatcaa |
14050410 |
T |
|
| Q |
207 |
atttaaaacacaaaccttttccgagtatacaagtacaccaatgaacttttttgaccaatccttagtatttcccaaggaaataaatttgcagtttacattt |
306 |
Q |
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| T |
14050409 |
atttaaaacacaaaccttttccgagtataca---acaccaatgaacttttttgaccaatcctcagtattttccaaggaaataaatttgcagtttacattt |
14050313 |
T |
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| Q |
307 |
acaagtgcatataatagaagaatcaaaacagctaaacaatgaaataacaatcnnnnnnngaaaatcatttcggtaaaaggatggtagaaaaaacacaaat |
406 |
Q |
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| | |||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
14050312 |
ataggtgcatataatataagaatcaaaacaactaaacaatgaaataacaatcaaaaaaagaaaatcatttcagtaaaaggatggtagaaaaaacacaaat |
14050213 |
T |
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| Q |
407 |
atccacatagctaattcgtgaataaattacctagttgtttttcttccaaatgtcatttatcacaagaaagaatgacggaaatagatcaaataaatgtagc |
506 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||| |
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| T |
14050212 |
atccacatagctaattcgtgaataaattacccagttgtttttcttccaaatgtcatttatcacaagaaagaatgacagtaagagatcaaataaatgtagc |
14050113 |
T |
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| Q |
507 |
accac |
511 |
Q |
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| T |
14050112 |
accac |
14050108 |
T |
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