View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0979-INSERTION-34 (Length: 688)
Name: NF0979-INSERTION-34
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-34 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 634; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 8 - 688
Target Start/End: Original strand, 49857635 - 49858316
Alignment:
| Q |
8 |
agaagtagtcataacaagtccaaatgttaaaagaagttacttctaattgtatggaagtaatgaagttgtctacaattaattattgtgagtagactgcttt |
107 |
Q |
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| T |
49857635 |
agaagtagtcataacaagtccaaatgttaaaagaagttacttctaattgtatggaagtaatgaagttgtctacaattaattattgtgagtagacttcttt |
49857734 |
T |
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| Q |
108 |
tggtattgaggatgtggaaagatgtcacggtaatagattttctctaaaatctcaagccttatttctttgttttctagctttcatctcggtgcttttaaaa |
207 |
Q |
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| T |
49857735 |
tgatattgaggatgtggaaagatgtcacggtaatagattttctctaaaatctcaagccttgtttctttgttttctagctttcatctcggtgcttttaaaa |
49857834 |
T |
|
| Q |
208 |
ttgttggatatgattatttgtgtttggctaatcaaggtgacaagtgatattagcataacaaagaccaaataaccatttgtttatatgaattatgggcatg |
307 |
Q |
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| T |
49857835 |
ttgttggatatgattatttgtgtttggctaatcgaggtgacaattgatattagcataacaaagaccaaataaccatttgtttatatgaattatgggcatt |
49857934 |
T |
|
| Q |
308 |
gatgtttgagcttggtcaattaagatgacaattgatatagacattacatgattaaacaatcatttagttataatcaaacatttttaagggaattgaacaa |
407 |
Q |
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| T |
49857935 |
gatgtttgagcttggccaattaagatgacaattgatatagacattacatgattaaacaatcatttagttataatcaaacatttttaagggaattgaacaa |
49858034 |
T |
|
| Q |
408 |
ccataacattataattcataatttgaggtatcaatctttgttgaaagacaaaggtagatggtagatcta-taagataaaagaaatatttcataacaataa |
506 |
Q |
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| T |
49858035 |
ccataacattataattcataatttgaggtatcaatctttgttgaaagacaaaggtagatggtagatctattaagataaaagaaatatttcataacaataa |
49858134 |
T |
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| Q |
507 |
tttgcatagcaacataggatcttgggatagaaaattctattttgtgatggaaatccaactcaatctaaaaattcaattttttagttaattaacttagtaa |
606 |
Q |
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| T |
49858135 |
tttgcatggcaacataggagcttgggatagaaaattctattttgtgatggaaatccaactcaatctaaaaattcaattttttagctaattaacttagtaa |
49858234 |
T |
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| Q |
607 |
aggagattggttattaactctagtctcctgtgggatcaatatcttttactacacaataaaactgtgcaattataggcttatc |
688 |
Q |
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| T |
49858235 |
aggagattggttattaactctagtctcctgtgggatcaatatcttttactacacaataaaactgtgcaattataggcttatc |
49858316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 338 - 423
Target Start/End: Complemental strand, 26269664 - 26269579
Alignment:
| Q |
338 |
attgatatagacattacatgattaaacaatcatttagttataatcaaacatttttaagggaattgaacaaccataacattataatt |
423 |
Q |
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| T |
26269664 |
attgatatagggattagaagatcaaaaaatcatttggttataataaaacatttttaaaggaactgaataattataacattataatt |
26269579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 187 - 303
Target Start/End: Complemental strand, 26269810 - 26269695
Alignment:
| Q |
187 |
ttcatctcggtgcttttaaaattgttggatatgattatttgtgtttggctaatcaaggtgacaagtgatattagcataacaaagaccaaataaccatttg |
286 |
Q |
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||||||| |||||||||||||||| | ||||||||||||| ||| ||||||| ||||||| |||| | | ||||| ||| ||||||| ||| || |
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| T |
26269810 |
ttcatcttagtgcttttaaaattgtggcatatgattatttgaacttgtctaatcatagtgacaattgatgtaaatataac-tagatcaaataatcatatg |
26269712 |
T |
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| Q |
287 |
tttatatgaattatggg |
303 |
Q |
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| T |
26269711 |
tttatatgaattatggg |
26269695 |
T |
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