View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0979-INSERTION-35 (Length: 609)
Name: NF0979-INSERTION-35
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-35 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 8 - 609
Target Start/End: Original strand, 15261031 - 15261633
Alignment:
| Q |
8 |
aaaagtacaatgaaagatgattcaatttcactctctaagacccttcttccatatacacttcatcttctacttctcatagctctcttacccattgttcttc |
107 |
Q |
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| T |
15261031 |
aaaagtacaatgaaagatgattcaatttcactctctaagacccttcttccatatacacttcatcttctacttctcatagctctcttacccattgttcttc |
15261130 |
T |
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| Q |
108 |
tttatttatacttttaccctttgtctcttacaaaatctcaaactcagcttcaccatgccactagttcttctccaacacattatacaggtatgttaatgca |
207 |
Q |
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| T |
15261131 |
tttatttatacttttaccctttgtctcttacaaaatctcaaactcagcttcaccatgccactagttcttctccaacacattatacaggtatgttaatgca |
15261230 |
T |
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| Q |
208 |
taactttgtcttctttaaactaatcatgtgtctcatattatgtcnnnnnnnnaaaagtaattcacacttgaaaatgattaggtgnnnnnnn-agaggaaa |
306 |
Q |
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| T |
15261231 |
taactttgtcttctttaaactaatcatgtgtctcatattatgtcttttttttaaaagtaattcacacttgaaaatgattaggtgttttttttagaggaaa |
15261330 |
T |
|
| Q |
307 |
aatgattaggtgttgaattgaacactaaaatggtgttgtatagtcttaaaaaatccatgttaggcagagtagttgaaagtagtggttgaatagttaagtg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15261331 |
aatgattaggtgttgaattgaacactaaaatggtgt-gtatagtcttaaaaaatccatgttagttagagtagttgaaagtagtggttgaatagttaagtg |
15261429 |
T |
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| Q |
407 |
tacaatatttaattaaatgaggtaatcattggaaacaaattagtaaatatttt-ttggtattttaaaatgacagataattttaggatgagaattaaacaa |
505 |
Q |
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| T |
15261430 |
tactatattcaattaaatgaggtaatcattggaaacaaattagtaaatatttttttggtattttaaaatgacaaataattttaagatgagaattaaacaa |
15261529 |
T |
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| Q |
506 |
acgcttatagtgagaaaggtaatattttttaacaaatcaccacaattaaggcctttggtctcgtaccacctcacgatatccggtataaggtagttgctct |
605 |
Q |
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| T |
15261530 |
acacttacagtgagaaaggtaatattttttaacaaatcaccacaattaaggcctttggtctcataccacctcatgatatccggtataaggtagttgctct |
15261629 |
T |
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| Q |
606 |
ttaa |
609 |
Q |
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| T |
15261630 |
ttaa |
15261633 |
T |
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