View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0979-INSERTION-37 (Length: 508)

Name: NF0979-INSERTION-37
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0979-INSERTION-37
NF0979-INSERTION-37
[»] chr6 (1 HSPs)
chr6 (7-508)||(421026-421527)


Alignment Details
Target: chr6 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 7 - 508
Target Start/End: Complemental strand, 421527 - 421026
Alignment:
Q  7 aagaatgatccactaaacataattaataatgtttatgaaatgttttaagaatgtaaatgttgtctaatttttgtgtaaagaaacatctctgtattttata 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  421527 aagaatgatccactaaacataattaataatgtttatgaaatgttttaagaatgtaaatgttgtctaatttttgtgtaaagaaacatctctgtattttata 421428  T
Q  107 gggacacaaatatatataattctataaggtggctctatcctctaggaacattggacaaaagagaattagcattattgaagaaaagaatgataaatgtttt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  421427 gggacacaaatatatataattctataaggtggctctatcctctaggaacattggacaaaagagaattagcattattgaagaaaagaatgataaatgtttt 421328  T
Q  207 caatgtgataaacagcattgattgactactnnnnnnnctattattttcaagctcgtacactatcagctaacctaacattaaagcagaaaattgcggccaa 306  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  421327 caatgtgataaacagcattgattgactactaaaaaaactattattttcaagctcgtacactatcagctaacctaacattaaagcagaaaattgcggccaa 421228  T
Q  307 caaaagctgatagtgtttgcttctatataaagaaatttaaagattcattcttaggaatcaatattgttttgtgagaatatattnnnnnnntaccaaatca 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  421227 caaaagctgatagtgtttgcttctatataaagaaatttaaagattcattcttaggaatcaatattgttttgtgagaatatattaaaaaaataccaaatca 421128  T
Q  407 cacaccaaagaggtaataaaggtgataaaaagaattgtatgttgcttctagttgaaacaatggattggaataccctcaaaatctcaaagttacctcttca 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  421127 cacaccaaagaggtaataaaggtgataaaaagaattgtatgttgcttctagttgaaacaatggattggaataccctcaaaatctcaaagttacctcttca 421028  T
Q  507 ag 508  Q
    ||    
T  421027 ag 421026  T

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