View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0979-INSERTION-39 (Length: 599)
Name: NF0979-INSERTION-39
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-39 |
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Alignment Details
Target: chr7 (Bit Score: 562; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 8 - 593
Target Start/End: Complemental strand, 33345781 - 33345196
Alignment:
| Q |
8 |
acaacttcattgcaacaacaaaggtgttcaattcttagaagccacgtgtgatatcactttaaaagattttggtagttttgattctacacatgttatccaa |
107 |
Q |
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| T |
33345781 |
acaacttcattgcaacaacaaaggtgttcaattcttagaagccacgtgtgatatcactttaaaagattttggtagttttgattctacacatgttgtccaa |
33345682 |
T |
|
| Q |
108 |
aaacttgttccaaagattaactatgatgttccagttggagatcttcctttgttggttgttcagttcaccaagtttccttgtgggtcactcactcttggtc |
207 |
Q |
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| T |
33345681 |
aaacttgttccaaagattaactatgatgttccagttgaagatcttcctttattggttgttcagttcaccaagtttccttgtgggtcactcactcttggtc |
33345582 |
T |
|
| Q |
208 |
ttgctatgggtcgttctgttcttgatggttcttctgctggtagtttcattagctcatgggctaaacttgccaaaggtgagagtttagattcaagtttgat |
307 |
Q |
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| T |
33345581 |
tttctatgggtcgttctgttcttgatggttcttctgctggtagtttcattagctcatgggctaaacttgccaaaggtgagagtttagattcaagtttgat |
33345482 |
T |
|
| Q |
308 |
accatttctagataatacattgttggattcaaaaatccttcatttaccaccacgttttcatcatcatgagttttctccaccacccctttgggaaaatagt |
407 |
Q |
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| T |
33345481 |
accatttctagataaaacattgttggattcaaaaatccttcatttaccaccacgttttcatcatcatgagttttctccaccacccctttgggaaaatagt |
33345382 |
T |
|
| Q |
408 |
agtaataactcaacacgtttgagtaaaaacccactctttgccactaccatgttgaaattcaccaaaaaacaagttgaaaaacttaagaacaaagccaata |
507 |
Q |
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| T |
33345381 |
agtaataactcaacacatttgagtaaaaacccactctttgccactaccatgttgaaattcaccaaaaaacaagttgaaaaacttaagaacaaagccaata |
33345282 |
T |
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| Q |
508 |
acaatgaaaacaaggtacgaggttatactagttttgaggttattagtggttacttatggaggtgtgttagtaaagtgcgttttgaa |
593 |
Q |
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| T |
33345281 |
acaatgaaaacaaggtacgaggttatactagttttgaggttattagtggttacttatggaggtgtgttagtaaagtgcgttttgaa |
33345196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 39 - 593
Target Start/End: Complemental strand, 33334157 - 33333580
Alignment:
| Q |
39 |
ttcttagaagccacgtgtgatatcactttaaaagattttggtagttttgattctacacatgttatccaaaaacttgttccaaagattaactatgatgttc |
138 |
Q |
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||||||||||||||||||||| | ||||| |||||||| |||||||||||||| ||||||||| || |||||||||||||||| |||||||||||||||| |
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| T |
33334157 |
ttcttagaagccacgtgtgatgttactttcaaagatttaggtagttttgattccacacatgttgtcaaaaaacttgttccaaaaattaactatgatgttc |
33334058 |
T |
|
| Q |
139 |
cagttggagatcttcctttgttggttgttcagttcaccaagtttccttgtgggtcactcactcttggtcttgctatgggtcgttctgttcttgatggttc |
238 |
Q |
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| T |
33334057 |
cgattgaagatgttcctttgttggctgtccaattcaccaagttttcatgtgggtccctcactcttggtcttgctatgtgtcgtgccgtacttgatggggc |
33333958 |
T |
|
| Q |
239 |
ttctgctggtagtttcattagctcatgggctaaacttgccaaa---ggtgagagtttagattcaagtttgatacca-tttctagataatacattgttgga |
334 |
Q |
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|| |||| || |||||| | ||||||||| |||||| | ||| | ||| |||||||||||||||||||||| ||||| ||||| || ||||| || |
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| T |
33333957 |
ctcagctgctaatttcatcaactcatgggcaaaacttactaaaattagaaagactttagattcaagtttgataccattttcttgataaaactttgttaga |
33333858 |
T |
|
| Q |
335 |
ttcaaaaatccttcatttaccaccacgttttcatcatcatgagttttctccaccacccctttgggaaaatagtagtaataactcaacacgtttgagtaaa |
434 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||| |||| | |||||||| |
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| T |
33333857 |
ttcaaaaatccttcatttaccaccacgttttcatcatcatgagttttctccaccacctctttgggaaattagtagttataactcgacacatgtgagtaaa |
33333758 |
T |
|
| Q |
435 |
a-ac-------ccactctttgccactaccatgttgaaattcaccaaaaaacaagttgaaaaac--ttaagaacaaagccaataacaat---------gaa |
515 |
Q |
| |
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| || ||||||||||||||||||||||||||| |||||||| | |||||||||| || | ||||||||||| || |||||| || |
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| T |
33333757 |
acaccattacaccactctttgccactaccatgttgaaactcaccaaacaccaagttgaaatacgatcaagaacaaagcaaacaacaataatgaaaaccaa |
33333658 |
T |
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| Q |
516 |
aacaaggtacgaggttatactagttttgaggttattagtggttacttatggaggtgtgttagtaaagtgcgttttgaa |
593 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| |
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| T |
33333657 |
aacaaggtacgaggtaatactagttttgaggttattagtggttacatatggaggtgtgtttgtaaagtgcgtgttgaa |
33333580 |
T |
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Back To:
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