View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0979-INSERTION-4 (Length: 1130)
Name: NF0979-INSERTION-4
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 130 - 472
Target Start/End: Original strand, 18696673 - 18697013
Alignment:
| Q |
130 |
ctagcactggcaattatattaagaactaaaaatttccctataataatcatttatagtatgcacattgatagtttttaatagttttgtattcatggtatgg |
229 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| | | |
|
|
| T |
18696673 |
ctagcactagcaattatattaagaactaaaaatttccctataataatcatttatagtatgcacattaataatttt-aatagttttgtattcatgatgaga |
18696771 |
T |
|
| Q |
230 |
attatgtatggtatttattcatgtaaagattttgcagattgaaatataggcaaatgtacaaggtattattttgaatcaattccactatttgattctatgc |
329 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
18696772 |
attatatatggtatttattcatgtaaagattttgcagattgaaatataggcaaatgtacaaggtattattctgaatcaattccacaatttgattctatgc |
18696871 |
T |
|
| Q |
330 |
actgtaattttttaaggtaagaggtgaaaatacataaacaatagtggtttcagctcctatctgttctttgtgtagcagctccttctagtggtttcagctc |
429 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||| |||| ||||||||||||| |||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
18696872 |
actgtaattttttaaggtaagaggcgaatatacataaacagtagtagtttcagctcctacctgttccttgtgtagcagctcctcctagtggtttcagctc |
18696971 |
T |
|
| Q |
430 |
ctcttaagccggaacttgggtacgtatttccctagagctgggg |
472 |
Q |
| |
|
|||||||| | || ||| || |||||||||||| ||||||||| |
|
|
| T |
18696972 |
ctcttaagtcagagctt-ggaacgtatttccctggagctgggg |
18697013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 681 - 1020
Target Start/End: Original strand, 18697088 - 18697418
Alignment:
| Q |
681 |
ttaatactttgtctaatatgatgacaaattacatgatttgttgttaacaggtcgtcgttgttgacaatgatcaagacatagaatgata-aagagtggtcc |
779 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||| ||||| |||||||| |||| |||| |||||||||| |||| |||||||| || |
|
|
| T |
18697088 |
ttaatacttttactaatatgatgacaaataacatgatttgtt---aacag-tcgtcgttactgacgatgactaagacatagagcgatagaagagtggccc |
18697183 |
T |
|
| Q |
780 |
aagagtttatgataccaactttattcccacc-atacaactaagccacttcttctcattgagatctccagcatgacgctgtttgctcggttcaacctcttg |
878 |
Q |
| |
|
|||| ||| ||||| || ||||||| | |||| |||||||||||| |||||||||||||||| ||||||||||||||||||| ||| ||||||||| |
|
|
| T |
18697184 |
aagaattt--gatactaa----attcccaactatacgactaagccacttattctcattgagatctcgagcatgacgctgtttgctcagttaaacctcttg |
18697277 |
T |
|
| Q |
879 |
ctgcatcaaacaatggtctagcacagttagtacaagac-aaaaccgcttaaatagatagttacagctgaggtttcagatacaaaatgagatgaaaaatat |
977 |
Q |
| |
|
| ||||||| | ||||||| ||||| ||||||||||| ||||| ||||||| ||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
18697278 |
cagcatcaagc--tggtctaacacagctagtacaagacaaaaactgcttaaa-agatagttacaact---gtttcagatacaaaatgagatgaaaaatat |
18697371 |
T |
|
| Q |
978 |
gg-aaaattc-actatttccaatag--aaaaaagaatagcgaaattc |
1020 |
Q |
| |
|
|| ||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
18697372 |
ggaaaaattcaactatttccaatagaaaaaaaagaatagcgaaattc |
18697418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 780 - 920
Target Start/End: Original strand, 40159584 - 40159725
Alignment:
| Q |
780 |
aagagtttatgataccaactttatt-cccaccatacaactaagccacttcttctcattgagatctccagcatgacgctgtttgctcggttcaacctcttg |
878 |
Q |
| |
|
||||||||||||||| ||||||||| |||| ||| | |||||||| || |||||||||||||||||||||||| |||||| |||| ||||||| ||| | |
|
|
| T |
40159584 |
aagagtttatgatactaactttattgcccatcattcgactaagcctctccttctcattgagatctccagcatggcgctgtctgcttagttcaacttctag |
40159683 |
T |
|
| Q |
879 |
ctgcatcaaacaatggtctagcacagttagtacaagacaaaa |
920 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
40159684 |
ctgcataaaacaatggtctcatacagttagtacaagacaaaa |
40159725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 866 - 1005
Target Start/End: Original strand, 33945834 - 33945976
Alignment:
| Q |
866 |
gttcaacctcttgctgcatcaaacaatggtctagcacagttagtacaaga-caaaaccgcttaaatagatagttacagctgaggtttcagatacaaaatg |
964 |
Q |
| |
|
||||| |||||||||||||||||| |||||||| |||||||||||||||| ||||| | | ||||||| ||||||| |||| |||||||||||||||| |
|
|
| T |
33945834 |
gttcagcctcttgctgcatcaaaccatggtctaacacagttagtacaagataaaaactgatcaaatagaaagttacaactgatgtttcagatacaaaatt |
33945933 |
T |
|
| Q |
965 |
agatgaaaaatatg-gaaaattc-actatttccaatagaaaaa |
1005 |
Q |
| |
|
|||||||||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
33945934 |
agatgaaaaatatgcaaaaattcaagtatttccaatagaaaaa |
33945976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 780 - 915
Target Start/End: Complemental strand, 39610075 - 39609939
Alignment:
| Q |
780 |
aagagtttatgataccaactttatt-cccaccatacaactaagccacttcttctcattgagatctccagcatgacgctgtttgctcggttcaacctcttg |
878 |
Q |
| |
|
||||||||||||||| ||||||| |||| ||| | |||||||| || ||||||| |||||||| ||||||| |||||| |||| ||||||||||||| |
|
|
| T |
39610075 |
aagagtttatgatactaactttacagcccatcattcgactaagcctctccttctcaatgagatctgcagcatggcgctgtctgcttagttcaacctcttg |
39609976 |
T |
|
| Q |
879 |
ctgcatcaaacaatggtctagcacagttagtacaaga |
915 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
39609975 |
ctgcatcaaaccatggtctcacacagttagtacaaga |
39609939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 572 - 627
Target Start/End: Original strand, 33945045 - 33945100
Alignment:
| Q |
572 |
tgcttccctcttttgcttatcagccttttctccgagttctctttttctctgcctct |
627 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | | |||||||| ||| ||||||| |
|
|
| T |
33945045 |
tgcttccctcttttgcttctcagccttttcttcaacttctctttctctttgcctct |
33945100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 855 - 889
Target Start/End: Original strand, 31742208 - 31742242
Alignment:
| Q |
855 |
ctgtttgctcggttcaacctcttgctgcatcaaac |
889 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
31742208 |
ctgtttgctcagttcaacctcttgctgcatcaaac |
31742242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University