View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0979-INSERTION-41 (Length: 598)
Name: NF0979-INSERTION-41
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-41 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 33 - 598
Target Start/End: Complemental strand, 24275440 - 24274862
Alignment:
| Q |
33 |
atttcttcagagaaaccattctcagttttaatgtctcaattctttaaccacctacttttcattatcttttacacaagcttctgaacaagttattgacaca |
132 |
Q |
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| T |
24275440 |
atttcttcagagaaaccattctcagttttaatgtctcaagtctttaaccacctacttttcattatcttttacacaagcttctgaacaagttattgacaca |
24275341 |
T |
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| Q |
133 |
aatggaaaacccatgtttgctggtggcacattctatattttgccagctatctttggagcagcaggkggtggattgaggcttgctaagactggaaactcaa |
232 |
Q |
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| T |
24275340 |
catggaaaacccatgtttgctggtggcacattctatattttgccagctatctttggagcagcaggtggtggattgaggcttgctaagactggaaactcaa |
24275241 |
T |
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| Q |
233 |
aatgtccatttactgtacttcaaaagattattttggttctatttattttaaaatagtttctttaaatttcatcaccattagaaggacccttcttaacaac |
332 |
Q |
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| T |
24275240 |
aatgtccatttactgtacttc--aagattattttggttctatttattttaaaatagtttctttaattttcatcacctttagaaggacccttcttaacaac |
24275143 |
T |
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| Q |
333 |
gcctagtgctatatagtgtatcacacatcaatagccatttgtacaaattacatgttatagatgataattaaaggaggagtcaatgt-------------- |
418 |
Q |
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| T |
24275142 |
acctagtgctatatagtgtatcacacatcaatagccatttgtacaaattacatattatagatgataattaaaggaggagtcaatgttttagcaactacat |
24275043 |
T |
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| Q |
419 |
------agctttcaaatgaaaatatatgcaggtgtaacggacaagtcctgtttctgaatagcttggatgtaggtgtaagagatagttttacaccgatttt |
512 |
Q |
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| T |
24275042 |
taacagagctttcaaatgaaaatatatgcaggtgtaacagacaagtcctgtttctgagtagcttgaatgtaggtgtaagagatagttttacactgatttt |
24274943 |
T |
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| Q |
513 |
gtatatagaaattaagtgaaacaaccaaccaaatcacagcaggaagggaaggaacatgttggtttgtttacctgtgacacctgatg |
598 |
Q |
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| T |
24274942 |
gtatatagaaattaagtgaaacaacaaaccaaatcacagca-----ggaaggaacatgtttgtttgtttacctgtgacacctgatg |
24274862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 76 - 255
Target Start/End: Complemental strand, 24222460 - 24222281
Alignment:
| Q |
76 |
ttaaccacctacttttcattatcttttacacaagcttctgaacaagttattgacacaaatggaaaacccatgtttgctggtggcacattctatattttgc |
175 |
Q |
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| T |
24222460 |
ttaaccatctgcttttcattagcttttgcacaagtttctgaacaagtttttgacacaaatggaaaccccatttttcctggtggcacattctatattatgc |
24222361 |
T |
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| Q |
176 |
cagctatctttggagcagcaggkggtggattgaggcttgctaagactggaaactcaaaatgtccatttactgtacttcaa |
255 |
Q |
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| T |
24222360 |
catcaatctttggagcagctggtggtggattgaggcttggtaagacaaaaaactcaaaatgtccacttactgtacttcaa |
24222281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 16351636 - 16351580
Alignment:
| Q |
199 |
ggtggattgaggcttgctaagactggaaactcaaaatgtccatttactgtacttcaa |
255 |
Q |
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| T |
16351636 |
ggtggattcaggcttggtgaaactgaaaattcaacatgtccatttactgtacttcaa |
16351580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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