View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0979-INSERTION-42 (Length: 502)

Name: NF0979-INSERTION-42
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0979-INSERTION-42
NF0979-INSERTION-42
[»] chr2 (1 HSPs)
chr2 (8-502)||(41830259-41830756)


Alignment Details
Target: chr2 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 8 - 502
Target Start/End: Complemental strand, 41830756 - 41830259
Alignment:
Q  8 tcttcaacctcaccaaatccaagtgatgagtcctcacctgaacctaacaaagatttcaatatacaacaagggtcctatatttctatacaacatgcaaatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41830756 tcttcaacctcaccaaatccaagtgatgagtcctcacctgaacctaacaaagatttcaatatacaacaagggtcctatatttctatacaacatgcaaatt 41830657  T
Q  108 acaacaactacatgagtatgcctatgttcacttcatcatcaacatctccatcaccatcaatattgcaaaacacaattttcaataccatgaatattgacac 207  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41830656 acaacagctacatgagtatgcctatgttcacttcatcatcaacatctccatcaccatcaatattgcaaaacacaattttcaataccatgaatattgacac 41830557  T
Q  208 gttgcctatgatggatcatagtggatacttcaacaatacagttactacaatgccatgcttttcgtcacaaaatcatgaagttgaaattaaaggttcttat 307  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41830556 gttgcctgtgatggatcatagtggatacttcaacaatacagttactacaatgccatgcttttcgtcacaaaatcacgaagttgaaattaaaggttcttat 41830457  T
Q  308 ttagaaaatggtgtgtttgggagtgtaaatattggagtagaaggggatatggagaataagtgcaacatagaaactaaccctaaccattctgattattatt 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41830456 ttagaaaatggtgtgtttgggagtgtaaatattggagtagaaggggatatggagaataagtgcaacatagaaactaaccctaaccattctgattattatt 41830357  T
Q  408 ttgatgacataaagataaacaatatgcttagtaactgcaatattattgaaagcaataataatgaaattgaaagtaggggt---gtagtggagaattta 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||    
T  41830356 ttgatgacataaagataaacaatatgcttagtaactgcaatattattgaaagcaataataataaaattgaaagtaggggtgaagtagtggagaattta 41830259  T

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