View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0979-INSERTION-43 (Length: 574)
Name: NF0979-INSERTION-43
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-43 |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 8 - 574
Target Start/End: Complemental strand, 24564920 - 24564358
Alignment:
| Q |
8 |
cttacaaagacattatgaatcataacttggaagttgttcaacatcgagtttcggggaattggaataacatttgaaagttaacattctcgtcgaaggtgaa |
107 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24564920 |
cttacagagacattatgaatcataacttggaagttgttcaacatcgagtttcggggaattggaataacatttgaaagttaacattgtcgtcgaaggtgaa |
24564821 |
T |
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| Q |
108 |
gaattttttgtggagagctttgtcgtaattgtttgcctaagagagttcggctacaaacaaaagatgttcaatataatgtccaaatcaatgtgtgctgtgt |
207 |
Q |
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| T |
24564820 |
gaaatttttgtggagagctttgtcgtaattgtttgcctaagagagttcggctacaaacaaaagatgttcaat-----gtccagatcaatgcgtgttgtgt |
24564726 |
T |
|
| Q |
208 |
gaaaagctcgattgtagacaatgctcatattttccttttgtgtagcaaaagtgtgctttgttggcaacgcattgacgtatggagaactctgatgactctt |
307 |
Q |
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| T |
24564725 |
gaaaagctcgattgtagacaatgctcatattttccttttgtgtagcaaaagtgtgctttgttggcaacgcattgacgtatggagtactctgatgactctt |
24564626 |
T |
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| Q |
308 |
ttcaatcctgatgcaagtttttcatcaaatgtgttcactattttacaacatcttgatcaatagcaaaattaattatttggtgtaaccctttggagtattt |
407 |
Q |
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| T |
24564625 |
ttcaatcctgatgcaagtttttcatcaaatgtgttcactattttacaacatcttgatcaatagcaaaatcaattatttggtgtaaccctttggagtattt |
24564526 |
T |
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| Q |
408 |
ggacacatagaaacaataaggtttgaaataatattgttgaatcaactcaatctatttgcgaacgagcatattatctcctcactagttgggtgaatgccc- |
506 |
Q |
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| T |
24564525 |
ggacgcatagaaacaataaggtttgaaataatattgttgaatcaactcaatctatttgcgaacgagcatattatctcctcactagttggatgaatgccca |
24564426 |
T |
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| Q |
507 |
aaccatgcaaaaacctgctctgagacaatttgatggtcacaatgagatgcattagcaaaaaccaagtc |
574 |
Q |
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| T |
24564425 |
aaccatgcgaaaacttgctttgagacaatttaacagacacaatgagatgcattagcaaaaactaagtc |
24564358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 306 - 574
Target Start/End: Complemental strand, 36505694 - 36505428
Alignment:
| Q |
306 |
ttttcaatcctgatgcaagtttttcatcaaatgtgttcactattttacaacatcttgatcaatagcaaaattaattatttggtgtaaccctttggagtat |
405 |
Q |
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| T |
36505694 |
ttttcgatcttgatgcaagttttccgacaaatgtgttcgttattttacaacatcttgatcaa---caaaagcaagtctttggtgtgaccctttggagtat |
36505598 |
T |
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| Q |
406 |
ttggacacatagaaacaataaggtttgaaataatattgttgaatcaactcaatctatttgcgaacgagcatattatctcctcactagttgggtgaatg-c |
504 |
Q |
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| T |
36505597 |
tttgaagcataaaaatgatatgatctaaaataatattattgaattaactcaatctatttgtcaacgagcaggttatctcttcactagctaggtgaatgtc |
36505498 |
T |
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| Q |
505 |
ccaaccatgcaaaaacctgctctgagacaatttgatggtcacaatgagatgcattagcaaaaaccaagtc |
574 |
Q |
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| T |
36505497 |
caaaccatgcaaaaacctgctcctagacaatttaatagtcaaggcgagatacattggcaaaaaccaagtc |
36505428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 304
Target Start/End: Complemental strand, 36509533 - 36509300
Alignment:
| Q |
63 |
gaattggaataacatttgaaagttaacattctcgtcgaaggtgaagaattttttgtggagagctttgtcgtaattgtttgcctaagagagttcggctaca |
162 |
Q |
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| T |
36509533 |
gaattggaataatatttgaaagttaaagttgtcgccgaatgtgaagaacttttagtggaaag-tttgccgtaattgtttatctacgagagtccaattaca |
36509435 |
T |
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| Q |
163 |
aacaaaagatgttcaatataatgtccaaatcaatgtgtgctgtgtgaaaagctcgattgtagacaatgctcatattttccttttgtgtagcaaaagtgtg |
262 |
Q |
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| T |
36509434 |
aacaaaaggtgttcaatg------ccaaatcagcgtgcggtgtgtgaaa-gctcggttgaagacattgctcatattttctttttgggcagcaaaaatgtg |
36509342 |
T |
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| Q |
263 |
ctttgttggcaacgcattgacgtatggagaactctgatgact |
304 |
Q |
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| T |
36509341 |
atttattggcagcgcactgatttatggagtactctgatgact |
36509300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 306 - 508
Target Start/End: Original strand, 11079336 - 11079538
Alignment:
| Q |
306 |
ttttcaatcctgatgcaagtttttcatcaaatgtgttcactattttacaacatcttgatcaatagcaaaattaattatttggtgtaaccctttggagtat |
405 |
Q |
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||||| ||| ||||| |||||||| | |||||||| |||||||||||||||| |||||| | ||||| ||| | |||||||| ||||| |||||||| |
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| T |
11079336 |
ttttcgatcatgatgtaagttttttgactaatgtgtttgctattttacaacatctagatcaacaacaaaagtaagtgtttggtgtgaccctctggagtat |
11079435 |
T |
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| Q |
406 |
ttggacacatagaaacaataaggtttgaaataatattgttgaatcaactcaatctatttgcgaacgagcatattatctcctcactagttgggtgaatgcc |
505 |
Q |
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||||| ||| || ||||| |||| | |||||||||| ||||||| |||| |||||||| ||||| | || ||||||||| ||||| |||||||| |
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| T |
11079436 |
ttggaaacaaaggaacaacaaggcctaaaataatatttttgaatccgctcagtctatttgtgaacggaaagtttccctcctcacttgttggatgaatgcc |
11079535 |
T |
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| Q |
506 |
caa |
508 |
Q |
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||| |
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| T |
11079536 |
caa |
11079538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 403 - 504
Target Start/End: Complemental strand, 17296332 - 17296231
Alignment:
| Q |
403 |
tatttggacacatagaaacaataaggtttgaaataatattgttgaatcaactcaatctatttgcgaacgagcatattatctcctcactagttgggtgaat |
502 |
Q |
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|||||||| |||||| ||||| ||||| |||||||||||| ||||||| |||||||||||| ||||| ||||||| | |||||||||||||| ||||| |
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| T |
17296332 |
tatttggaaacataggaacaacaaggtctgaaataatattattgaatccgctcaatctatttatgaacgggcatattctatcctcactagttggatgaat |
17296233 |
T |
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| Q |
503 |
gc |
504 |
Q |
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|| |
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| T |
17296232 |
gc |
17296231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 10213013 - 10213065
Alignment:
| Q |
98 |
cgaaggtgaagaattttttgtggagagctttgtcgtaattgtttgcctaagaga |
151 |
Q |
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| T |
10213013 |
cgaaggttaagaactttttgtggagagc-ttgtcgtaattgtttgcctacgaga |
10213065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 429
Target Start/End: Original strand, 10213226 - 10213337
Alignment:
| Q |
318 |
atgcaagtttttcatcaaatgtgttcactattttacaacatcttgatcaatagcaaaattaattatttggtgtaaccctttggagtatttggacacatag |
417 |
Q |
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||||||| ||| || | |||||||| |||||||||||||||| |||||| | ||||| || |||||| ||| || || |||||||| |||| ||| | |
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| T |
10213226 |
atgcaagctttccaaccaatgtgtttgctattttacaacatctggatcaacatcaaaaacaagtatttgatgtgactctatggagtatatggaagcatcg |
10213325 |
T |
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| Q |
418 |
aaacaataaggt |
429 |
Q |
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|||||||||||| |
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| T |
10213326 |
aaacaataaggt |
10213337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 16434970 - 16435050
Alignment:
| Q |
97 |
tcgaaggtgaagaattttttgtggagagctttgtcgtaattgtttgcctaagagag-ttcggctacaaacaaaagatgttca |
177 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||| ||| || || || ||||| ||||||||||||||||||| |
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| T |
16434970 |
tcgaaggtgaagaattttttgtggagagc-ttgccgtaatttattgtgtacgatagtttcggttacaaacaaaagatgttca |
16435050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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