View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0979-INSERTION-44 (Length: 593)

Name: NF0979-INSERTION-44
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0979-INSERTION-44
NF0979-INSERTION-44
[»] chr5 (1 HSPs)
chr5 (156-592)||(3920415-3920873)
[»] chr3 (4 HSPs)
chr3 (175-303)||(43263802-43263929)
chr3 (173-232)||(21708295-21708354)
chr3 (196-293)||(41799977-41800074)
chr3 (178-256)||(36747224-36747302)
[»] scaffold0700 (1 HSPs)
scaffold0700 (181-269)||(5144-5232)
[»] chr6 (2 HSPs)
chr6 (166-250)||(6562350-6562434)
chr6 (201-269)||(5720609-5720677)
[»] chr8 (2 HSPs)
chr8 (181-248)||(27823241-27823308)
chr8 (179-229)||(39240870-39240920)
[»] chr7 (4 HSPs)
chr7 (203-305)||(28117313-28117414)
chr7 (181-249)||(19527044-19527112)
chr7 (201-286)||(45266697-45266782)
chr7 (180-248)||(38947521-38947589)
[»] chr1 (3 HSPs)
chr1 (200-312)||(11803124-11803236)
chr1 (179-269)||(15826454-15826546)
chr1 (179-269)||(29141940-29142032)
[»] chr4 (2 HSPs)
chr4 (183-266)||(45685742-45685825)
chr4 (178-214)||(13968173-13968209)


Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 156 - 592
Target Start/End: Complemental strand, 3920873 - 3920415
Alignment:
Q  156 tgatgattccttaccagacaaccgtattacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaattaaaaa 255  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3920873 tgataattccttaccagacaaccgtattacaaaatcaaccatttgattgaaagatattataatatagatcatatctattacatttgacattaattaaaaa 3920774  T
Q  256 taatttgatatgtcgatgtcatacatcaaaagtaacttcttatgaactttaaaaaacgggttagttttagcag----------------------gcaca 333  Q
    | |||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||                      |||||    
T  3920773 tcatttgatatgtcaatgacatacatcaaaagaaacttcttatgaactttaaaaaacgggttagttttagcagaggggaattatgagtgaaaaatgcaca 3920674  T
Q  334 aaaaccaatagtaccttggtttgaaaaatgaatgaaagtggctcagtgtgaatgaattaccactgagtagcaacattgaatgcactcaactactcattgt 433  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3920673 aaaaccaatagtaccttggtttgaaaaatgaatgaaagtggctcagtgtgaatgaattaccactgagtagcaacattgaatgcactcaactactcattgt 3920574  T
Q  434 tcatcgaattcaattttaactgtgaccacatcaacagcaacagcaactactttgtctgatctgagtatcgcagtctttaggtagtaaccatttatttcat 533  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3920573 tcatcgaattcaattttaactgtgaccacatcaacagcaacagcaactactttgtctgatctgagtatcgcagtctttaggtagtaaccatttatttcat 3920474  T
Q  534 ttcactttcttcctctcttcaggcccacacttccttccatttacatacattcatacatt 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3920473 ttcactttcttcctctcttcaggcccacacttccttccatttacatacattcatacatt 3920415  T

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Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 175 - 303
Target Start/End: Complemental strand, 43263929 - 43263802
Alignment:
Q  175 aaccgtattacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaattaaaaataatttgatatgtcgatgt 274  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||  | || |||||||||| | | || |||||||||| | |||     
T  43263929 aaccgttttacaaaatca-ccgtttgattgaaacatattataatatagatcatgtctacaaaatatgacattaatcatatattatttgatatggcaatga 43263831  T
Q  275 catacatcaaaagtaacttcttatgaact 303  Q
     ||| ||||||| |||| |||||||||||    
T  43263830 gataaatcaaaattaacgtcttatgaact 43263802  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 21708295 - 21708354
Alignment:
Q  173 acaaccgtattacaaaatcaaccgtttgattgaaagatattataatatagatcatgtcta 232  Q
    ||||||||||||||||||||| |||| ||||||||||| ||| |  ||||||||||||||    
T  21708295 acaaccgtattacaaaatcaatcgttggattgaaagatgttacatcatagatcatgtcta 21708354  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 196 - 293
Target Start/End: Complemental strand, 41800074 - 41799977
Alignment:
Q  196 gtttgattgaaagatattataatatagatcatgtctattacatttgacattaattaaaaataatttgatatgtcgatgtcatacatcaaaagtaactt 293  Q
    |||||||||||| ||||||||| ||| ||||| ||||  | |||| |||||||| |||||  |||||||||||| ||   ||||||||||| ||||||    
T  41800074 gtttgattgaaatatattataacataaatcatatctacaaaattttacattaatcaaaaactatttgatatgtcaattaaatacatcaaaattaactt 41799977  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 36747302 - 36747224
Alignment:
Q  178 cgtattacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaattaaaaat 256  Q
    ||||||| |||||  || ||| |||||||| ||||||||| ||| ||||| ||||| | |||||| |||||||||||||    
T  36747302 cgtattaaaaaattgactgttagattgaaacatattataacatatatcatttctataaaatttgatattaattaaaaat 36747224  T

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Target: scaffold0700 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0700
Description:

Target: scaffold0700; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 269
Target Start/End: Original strand, 5144 - 5232
Alignment:
Q  181 attacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaattaaaaataatttgatatgtc 269  Q
    |||| ||||| || |||| ||||||||| |||||||| ||||||||||||||| |  |||||||||||| |||||| ||||||||||||    
T  5144 attaaaaaattaaacgttggattgaaagctattataacatagatcatgtctataaagtttgacattaataaaaaattatttgatatgtc 5232  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 250
Target Start/End: Complemental strand, 6562434 - 6562350
Alignment:
Q  166 ttaccagacaaccgtattacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaatt 250  Q
    |||||| | |||| |||||||||||||||| || ||||||||  |||||| | ||||||||||||||  | ||||||||||||||    
T  6562434 ttaccacataaccatattacaaaatcaaccattggattgaaaactattatcacatagatcatgtctacaaaatttgacattaatt 6562350  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 269
Target Start/End: Complemental strand, 5720677 - 5720609
Alignment:
Q  201 attgaaagatattataatatagatcatgtctattacatttgacattaattaaaaataatttgatatgtc 269  Q
    |||||||||||| |||  ||||| ||||||||| | ||||||||| ||| | |||| ||||||||||||    
T  5720677 attgaaagatataatagcatagaccatgtctataaaatttgacatgaatcataaatcatttgatatgtc 5720609  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 181 - 248
Target Start/End: Complemental strand, 27823308 - 27823241
Alignment:
Q  181 attacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaa 248  Q
    ||||||||||| |||||| |||||||||||||||||| ||||||||| | ||| | |||| |||||||    
T  27823308 attacaaaatcgaccgttggattgaaagatattataacatagatcatatttatgaaattttacattaa 27823241  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 39240870 - 39240920
Alignment:
Q  179 gtattacaaaatcaaccgtttgattgaaagatattataatatagatcatgt 229  Q
    ||||||| ||||  |||||| |||||||| |||||||||||||||||||||    
T  39240870 gtattacgaaatagaccgttagattgaaacatattataatatagatcatgt 39240920  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 305
Target Start/End: Complemental strand, 28117414 - 28117313
Alignment:
Q  203 tgaaagatattataatatagatcatgtctattacatttgacattaattaaaaataatttgatatgtcgatgtcatacatcaaaagtaacttcttatgaac 302  Q
    |||||||||||||||||||||||||| ||||   |||||||||| ||   | ||||||||||||||| |||  || |||||||| |||| ||| ||||||    
T  28117414 tgaaagatattataatatagatcatg-ctatacaatttgacatttatcggatataatttgatatgtcaatgaaatgcatcaaaattaacgtctaatgaac 28117316  T
Q  303 ttt 305  Q
    |||    
T  28117315 ttt 28117313  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 19527044 - 19527112
Alignment:
Q  181 attacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaat 249  Q
    ||||||||||| |||||| ||||||||| |||||| | |||||||||||| |  | |||||||||||||    
T  19527044 attacaaaatccaccgttggattgaaagctattatcacatagatcatgtcaacaaaatttgacattaat 19527112  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 45266697 - 45266782
Alignment:
Q  201 attgaaagatattataatatagatcatgt-ctattacatttgacattaattaaaaataatttgatatgtcgatgtcatacatcaaaa 286  Q
    ||||||||||||||||| |||||| || | |||| | |||| |||||||| ||||||||||||||||||| ||   |||||||||||    
T  45266697 attgaaagatattataacatagataattttctataa-atttaacattaataaaaaataatttgatatgtcaataagatacatcaaaa 45266782  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 38947521 - 38947589
Alignment:
Q  180 tattacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaa 248  Q
    |||||||||||  || ||| ||||||||||||||| || ||||||||||| ||| | |||| |||||||    
T  38947521 tattacaaaattgactgttggattgaaagatattaaaacatagatcatgtgtataaaattttacattaa 38947589  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 200 - 312
Target Start/End: Complemental strand, 11803236 - 11803124
Alignment:
Q  200 gattgaaagatattataatatagatcat-gtctattacatttgacattaattaaaaataatttgatatgtcgatgtcatacatcaaaagtaacttcttat 298  Q
    |||||| ||||||||||||||||||| | || ||| | |||||||||||||  ||||||| ||||| |||| |||  || |||||||| |||| ||||||    
T  11803236 gattgagagatattataatatagatctttgtatataaaatttgacattaatcgaaaataagttgatttgtcaatgagatgcatcaaaattaacgtcttat 11803137  T
Q  299 gaactttaaaaaac 312  Q
     || ||||||||||    
T  11803136 caa-tttaaaaaac 11803124  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 15826546 - 15826454
Alignment:
Q  179 gtattacaaaatcaaccgtttgattgaaagatattataatatagatca--tgtctattacatttgacattaattaaaaataatttgatatgtc 269  Q
    |||||| |||||  ||| || |||||| ||||||||||||||| ||||  ||| ||| | ||||||||||||| | |||| ||||||||||||    
T  15826546 gtattataaaattgaccattggattgatagatattataatataaatcatgtgtatataaaatttgacattaatcataaattatttgatatgtc 15826454  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 29141940 - 29142032
Alignment:
Q  179 gtattacaaaatcaaccgtttgattgaaagatattataatatagatc--atgtctattacatttgacattaattaaaaataatttgatatgtc 269  Q
    |||||| |||||| |  ||| |||||||| |||||||||||||| ||  || | ||| | |||||||||||||||||||| |||| |||||||    
T  29141940 gtattataaaatcgattgttggattgaaaaatattataatatagctctcatctatataaaatttgacattaattaaaaatcatttaatatgtc 29142032  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 45685742 - 45685825
Alignment:
Q  183 tacaaaatcaaccgtttgattgaaagatattataatatagatcatgtctattacatttgacattaattaaaaataatttgatat 266  Q
    ||||||||| |  ||| ||||||||||| ||||||||||||| |||| ||| | |||||| |||||| | |||| |||||||||    
T  45685742 tacaaaatcgattgttagattgaaagatgttataatatagataatgtttataaaatttgatattaataagaaatcatttgatat 45685825  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 13968209 - 13968173
Alignment:
Q  178 cgtattacaaaatcaaccgtttgattgaaagatatta 214  Q
    |||||||||||||  ||||||||||||||||||||||    
T  13968209 cgtattacaaaattgaccgtttgattgaaagatatta 13968173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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