View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0979-INSERTION-47 (Length: 432)

Name: NF0979-INSERTION-47
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0979-INSERTION-47
NF0979-INSERTION-47
[»] chr2 (18 HSPs)
chr2 (8-193)||(9007354-9007539)
chr2 (8-193)||(9029251-9029436)
chr2 (8-161)||(8994594-8994747)
chr2 (292-400)||(9029562-9029670)
chr2 (294-394)||(13001597-13001697)
chr2 (92-193)||(9019824-9019925)
chr2 (302-400)||(17117643-17117741)
chr2 (65-143)||(8978445-8978524)
chr2 (205-252)||(9029477-9029524)
chr2 (352-400)||(25222341-25222389)
chr2 (212-252)||(41096693-41096733)
chr2 (344-400)||(42759754-42759810)
chr2 (205-248)||(13001471-13001514)
chr2 (205-252)||(1226415-1226462)
chr2 (352-400)||(6530677-6530725)
chr2 (352-400)||(19367417-19367465)
chr2 (352-400)||(42411556-42411604)
chr2 (205-252)||(42759903-42759948)
[»] chr1 (14 HSPs)
chr1 (292-400)||(1269509-1269617)
chr1 (205-251)||(1269422-1269468)
chr1 (292-400)||(5560433-5560549)
chr1 (292-353)||(37873815-37873876)
chr1 (352-400)||(12884135-12884183)
chr1 (292-355)||(15441240-15441303)
chr1 (292-355)||(27703580-27703643)
chr1 (205-252)||(50552357-50552404)
chr1 (358-400)||(50552519-50552561)
chr1 (294-391)||(26486380-26486477)
chr1 (352-400)||(6150739-6150787)
chr1 (352-400)||(30899674-30899722)
chr1 (352-400)||(33124628-33124676)
chr1 (212-252)||(48722527-48722566)
[»] chr8 (13 HSPs)
chr8 (296-400)||(42777707-42777811)
chr8 (351-395)||(3628750-3628794)
chr8 (145-193)||(44882742-44882790)
chr8 (205-252)||(33452655-33452701)
chr8 (292-400)||(34523949-34524065)
chr8 (352-395)||(39697941-39697984)
chr8 (205-239)||(42777615-42777649)
chr8 (359-400)||(43968068-43968109)
chr8 (352-400)||(3471618-3471666)
chr8 (352-400)||(5869320-5869368)
chr8 (352-400)||(12531577-12531625)
chr8 (343-395)||(36515159-36515211)
chr8 (352-400)||(43926321-43926369)
[»] chr7 (16 HSPs)
chr7 (292-395)||(32956725-32956836)
chr7 (292-400)||(26633313-26633429)
chr7 (352-400)||(30739141-30739189)
chr7 (352-395)||(18895400-18895443)
chr7 (294-396)||(40737993-40738103)
chr7 (354-395)||(42312029-42312070)
chr7 (352-400)||(8358292-8358340)
chr7 (294-395)||(9479079-9479188)
chr7 (352-400)||(44876153-44876201)
chr7 (205-252)||(11672447-11672493)
chr7 (205-246)||(6380244-6380285)
chr7 (357-394)||(33419121-33419158)
chr7 (352-400)||(1366027-1366075)
chr7 (352-400)||(26282540-26282588)
chr7 (352-400)||(33910082-33910130)
chr7 (352-400)||(40001694-40001742)
[»] chr6 (8 HSPs)
chr6 (292-400)||(11088506-11088613)
chr6 (352-400)||(29401158-29401206)
chr6 (205-252)||(6360624-6360670)
chr6 (292-400)||(30915364-30915480)
chr6 (352-400)||(57706-57754)
chr6 (352-400)||(628093-628141)
chr6 (352-400)||(12614714-12614762)
chr6 (352-400)||(31861019-31861067)
[»] chr4 (8 HSPs)
chr4 (352-395)||(43154791-43154834)
chr4 (292-400)||(5545279-5545395)
chr4 (352-400)||(21791545-21791593)
chr4 (352-400)||(10575521-10575569)
chr4 (352-400)||(11681740-11681788)
chr4 (352-400)||(11690019-11690067)
chr4 (292-352)||(22423634-22423694)
chr4 (352-400)||(53011730-53011778)
[»] chr3 (12 HSPs)
chr3 (292-395)||(42009265-42009376)
chr3 (292-355)||(21596285-21596348)
chr3 (296-355)||(1649882-1649941)
chr3 (205-252)||(8364035-8364081)
chr3 (294-394)||(19965884-19965992)
chr3 (359-400)||(15987225-15987266)
chr3 (359-400)||(29387752-29387793)
chr3 (352-389)||(54430570-54430607)
chr3 (352-400)||(8364190-8364238)
chr3 (357-393)||(23067730-23067766)
chr3 (352-400)||(41707053-41707101)
chr3 (352-400)||(51939554-51939602)
[»] chr5 (11 HSPs)
chr5 (352-400)||(29156208-29156256)
chr5 (292-354)||(27351299-27351361)
chr5 (352-390)||(33281692-33281730)
chr5 (294-355)||(23069172-23069233)
chr5 (352-400)||(13656228-13656276)
chr5 (352-400)||(19099312-19099360)
chr5 (352-392)||(7390406-7390446)
chr5 (352-400)||(10591271-10591319)
chr5 (352-400)||(13474648-13474696)
chr5 (352-400)||(17513934-17513982)
chr5 (352-400)||(20976003-20976051)
[»] scaffold0126 (1 HSPs)
scaffold0126 (352-400)||(16728-16776)


Alignment Details
Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 9007354 - 9007539
Alignment:
Q  8 tgaacagcatcaggataagaactttgatgatgtgaaaggggtgaacattgtcaaatgtttcaaaacagtttactatacacaacatcagcagccaaacaac 107  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9007354 tgaacagcatcaggataagaactttgatgatgtgaaagaggtgaacattgtcaaatgtttcaaaacagtttactatacacaacatcagcagccaaacaac 9007453  T
Q  108 aattctaagcaagcataattttattcggagaaatatctgtcgcatgatattgagggttggttggacttcttgttcactttttagtg 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||    
T  9007454 aattctaagcaagcataattttattcggagaaatatctgtcgcatgatattgagggttggttggactgcttgttaattttttagtg 9007539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 9029251 - 9029436
Alignment:
Q  8 tgaacagcatcaggataagaactttgatgatgtgaaaggggtgaacattgtcaaatgtttcaaaacagtttactatacacaacatcagcagccaaacaac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||    
T  9029251 tgaacagcatcaggataagaactttgatgatgtgaaaggggtgaacattgtcaaatgtttcaaaacagttatctatagacaacatcagcagccaaacaac 9029350  T
Q  108 aattctaagcaagcataattttattcggagaaatatctgtcgcatgatattgagggttggttggacttcttgttcactttttagtg 193  Q
    ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||    
T  9029351 aatgctaagcaagcataatttgattcggagaaatatctgtcgcatgatattgagggttgaatggaattcttgttcactttttagtg 9029436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 8994594 - 8994747
Alignment:
Q  8 tgaacagcatcaggataagaactttgatgatgtgaaaggggtgaacattgtcaaatgtttcaaaacagtttactatacacaacatcagcagccaaacaac 107  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||| ||||| ||| ||||||||||||||||||    
T  8994594 tgaagagcatcaggataagaactttgatgatgtgcaaggggtgaacaatgtccaatgtttcaaaacagtttcctatagacagcatcagcagccaaacaac 8994693  T
Q  108 aattctaagcaagcataattttattcggagaaatatctgtcgcatgatattgag 161  Q
    ||| ||||||||||||||||| ||||| |||||||||||||| |||| ||||||    
T  8994694 aatgctaagcaagcataatttgattcgtagaaatatctgtcggatgacattgag 8994747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 292 - 400
Target Start/End: Original strand, 9029562 - 9029670
Alignment:
Q  292 agactctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgtataattagtcaatttaaaaagttatttcattaaaagaatca 391  Q
    |||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9029562 agactctaattctcctttctagacataaatatgttgctatcaaagcagccccaatttgtataattagtcaatttagaaagttatttcattaaaagaatca 9029661  T
Q  392 caactatca 400  Q
    ||| |||||    
T  9029662 caagtatca 9029670  T

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Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 294 - 394
Target Start/End: Original strand, 13001597 - 13001697
Alignment:
Q  294 actctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgtataattagtcaatttaaaaagttatttcattaaaagaatcaca 393  Q
    |||||||||||||||| || ||||||||||| |||||| |||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  13001597 actctaattctcctttttatacataaatttgatgctatcaaaccacccccaatttgtataattagtcaatttataaagctatttcattaaaagaatcaca 13001696  T
Q  394 a 394  Q
    |    
T  13001697 a 13001697  T

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Target: chr2; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 92 - 193
Target Start/End: Original strand, 9019824 - 9019925
Alignment:
Q  92 tcagcagccaaacaacaattctaagcaagcataattttattcggagaaatatctgtcgcatgatattgagggttggttggacttcttgttcactttttag 191  Q
    ||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||  || |||||| |||||||| |||||    
T  9019824 tcagcagccaaacaacatttctaaggaagcataatttgattcggagaaatatttgtcgcatgatattgagggtttattagacttcctgttcactctttag 9019923  T
Q  192 tg 193  Q
    ||    
T  9019924 tg 9019925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 302 - 400
Target Start/End: Complemental strand, 17117741 - 17117643
Alignment:
Q  302 tctcctttctagacataaatttgttgctataaaaccagccccaatttgtataattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||||| ||| ||||||||| || | |||| |||||| |||||||||||||||| ||||||||| ||||| ||||||||| ||||||||||||| ||||    
T  17117741 tctcctatctggacataaatctggtactatcaaaccacccccaatttgtataatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatca 17117643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 8978445 - 8978524
Alignment:
Q  65 tttcaaaacagtttactatacacaacat-cagcagccaaacaacaattctaagcaagcataattttattcggagaaatat 143  Q
    |||||||||| ||| ||||| |||| || ||||||||||||| || ||||||||||||||||||| ||||||||||||||    
T  8978445 tttcaaaacaatttcctatatacaatattcagcagccaaacagcatttctaagcaagcataatttgattcggagaaatat 8978524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 9029477 - 9029524
Alignment:
Q  205 ttaagtctaatatccacaccccacttaaataaaaatatatatatgtta 252  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9029477 ttaagtctaatatccacaccccacttaaataaaaaaatatatatgtta 9029524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 25222341 - 25222389
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    ||||||||||||||| |||||||||||||| ||||||||||||| ||||    
T  25222341 taattagtcaatttagaaagttatttcattgaaagaatcacaacaatca 25222389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 41096733 - 41096693
Alignment:
Q  212 taatatccacaccccacttaaataaaaatatatatatgtta 252  Q
    ||||| |||| ||||||||||||||||||||||||||||||    
T  41096733 taatacccaccccccacttaaataaaaatatatatatgtta 41096693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 42759810 - 42759754
Alignment:
Q  344 aatttgtataattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    ||||| |||||| |||||||||  |||||||||||||| ||||||||||||| ||||    
T  42759810 aatttttataatcagtcaatttggaaagttatttcattgaaagaatcacaacaatca 42759754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 13001471 - 13001514
Alignment:
Q  205 ttaagtctaatatccacaccccacttaaataaaaatatatatat 248  Q
    |||||| |||||||||||||||||||||||| | ||||||||||    
T  13001471 ttaagtttaatatccacaccccacttaaatatatatatatatat 13001514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 1226462 - 1226415
Alignment:
Q  205 ttaagtctaatatccacaccccacttaaata-aaaatatatatatgtta 252  Q
    |||||||||||| |||||||||||||||||| |||| ||||||||||||    
T  1226462 ttaagtctaata-ccacaccccacttaaataaaaaaaatatatatgtta 1226415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 6530677 - 6530725
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||| ||||||||| ||||||||||||| ||||    
T  6530677 taatcagtcaatttgaaaaggtatttcattgaaagaatcacaacaatca 6530725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 19367465 - 19367417
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||| ||||||||| ||||||||||||| ||||    
T  19367465 taatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatca 19367417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 42411604 - 42411556
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    ||||||||||||||  |||| ||||||||| ||||||||||||| ||||    
T  42411604 taattagtcaatttggaaagctatttcatttaaagaatcacaacaatca 42411556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 42759948 - 42759903
Alignment:
Q  205 ttaagtctaatatccacaccccacttaaataaaaatatatatatgtta 252  Q
    |||| ||||||||||||  |||||||||||||||| ||||||||||||    
T  42759948 ttaaatctaatatccac--cccacttaaataaaaaaatatatatgtta 42759903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 292 - 400
Target Start/End: Original strand, 1269509 - 1269617
Alignment:
Q  292 agactctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgtataattagtcaatttaaaaagttatttcattaaaagaatca 391  Q
    |||||||||||||||||||||||||||||| || |||||| |||||| |||||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  1269509 agactctaattctcctttctagacataaatctgatgctatgaaaccacccccaatttgtaaaattagtcaatttgaaaagctatttcattaaaagaatca 1269608  T
Q  392 caactatca 400  Q
    |||| ||||    
T  1269609 caacaatca 1269617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 1269422 - 1269468
Alignment:
Q  205 ttaagtctaatatccacaccccacttaaataaaaatatatatatgtt 251  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  1269422 ttaagtctaatatccacacctcacttaaataaaaatatatatatgtt 1269468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 400
Target Start/End: Original strand, 5560433 - 5560549
Alignment:
Q  292 agactctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgtataatta--------gtcaatttaaaaagttatttcattaa 383  Q
    ||||| || ||||| ||||| ||||||||| || |||||  |||||| |||||||||||||||| |        |||||||||||||||||||||||| |    
T  5560433 agactatagttctcatttctggacataaatctggtgctaccaaaccacccccaatttgtataatcacttaatcagtcaatttaaaaagttatttcattga 5560532  T
Q  384 aagaatcacaactatca 400  Q
    |||||||||||| ||||    
T  5560533 aagaatcacaacaatca 5560549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 292 - 353
Target Start/End: Complemental strand, 37873876 - 37873815
Alignment:
Q  292 agactctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgtata 353  Q
    |||||||| |||| ||||||||||||||||||| |||||| |||||| |  |||||||||||    
T  37873876 agactctagttctactttctagacataaatttgatgctatcaaaccaccatcaatttgtata 37873815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 12884183 - 12884135
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||||||||| ||||||||| ||||||||||||| ||||    
T  12884183 taatcagtcaatttaaaaagctatttcattgaaagaatcacaacaatca 12884135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 15441240 - 15441303
Alignment:
Q  292 agactctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgtataat 355  Q
    |||||||| ||||||||||||||||||||| |  |||||| |||||| |  |||||||||||||    
T  15441240 agactctagttctcctttctagacataaatataatgctatcaaaccacctacaatttgtataat 15441303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 355
Target Start/End: Complemental strand, 27703643 - 27703580
Alignment:
Q  292 agactctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgtataat 355  Q
    |||||||| ||||| ||| |  ||||||||||| |||||| |||||| ||||||||||||||||    
T  27703643 agactctagttctcttttttgaacataaatttgatgctatcaaaccacccccaatttgtataat 27703580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 50552357 - 50552404
Alignment:
Q  205 ttaagtctaatatccacaccccacttaaataaaaatatatatatgtta 252  Q
    |||| ||||||| |||| ||||||||||||||||| ||||||||||||    
T  50552357 ttaaatctaatacccaccccccacttaaataaaaaaatatatatgtta 50552404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 400
Target Start/End: Original strand, 50552519 - 50552561
Alignment:
Q  358 gtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||||||| ||||||||||||||| ||||||||||||| ||||    
T  50552519 gtcaatttgaaaagttatttcattgaaagaatcacaacaatca 50552561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 391
Target Start/End: Complemental strand, 26486477 - 26486380
Alignment:
Q  294 actctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgtataattagtcaatttaaaaagttatttcattaaaagaatca 391  Q
    |||||| |||| |||||| || ||||||||| |||||| |||||| |  ||||||||||||| | | ||| | ||||| ||||||||| ||| |||||    
T  26486477 actctagttctactttctggaaataaatttgatgctatcaaaccatcatcaatttgtataatcacttaatctgaaaagctatttcattgaaaaaatca 26486380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 6150739 - 6150787
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||| ||||||||| ||||||||||||| ||||    
T  6150739 taatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatca 6150787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 30899674 - 30899722
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    ||||||||||||||  |||| ||||||||| ||||||||||||| ||||    
T  30899674 taattagtcaatttggaaagctatttcattgaaagaatcacaacaatca 30899722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 33124676 - 33124628
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||| ||||||||| ||||||||||||| ||||    
T  33124676 taataagtcaatttgaaaagctatttcattgaaagaatcacaacaatca 33124628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 48722566 - 48722527
Alignment:
Q  212 taatatccacaccccacttaaataaaaatatatatatgtta 252  Q
    |||||||||| ||||||||||||||||| ||||||||||||    
T  48722566 taatatccaccccccacttaaataaaaa-atatatatgtta 48722527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 296 - 400
Target Start/End: Original strand, 42777707 - 42777811
Alignment:
Q  296 tctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgtataattagtcaatttaaaaagttatttcattaaaagaatcacaac 395  Q
    ||||||||||||||||| |||||||| || || ||| |||||| ||||||||||| ||||||||||||||| |||| ||||| |||||||||||||||||    
T  42777707 tctaattctcctttctatacataaatatgatgatatcaaaccacccccaatttgtgtaattagtcaatttagaaagctatttaattaaaagaatcacaac 42777806  T
Q  396 tatca 400  Q
     ||||    
T  42777807 aatca 42777811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 395
Target Start/End: Complemental strand, 3628794 - 3628750
Alignment:
Q  351 ataattagtcaatttaaaaagttatttcattaaaagaatcacaac 395  Q
    ||||| ||||||||| ||||||||||||||| |||||||||||||    
T  3628794 ataatcagtcaatttgaaaagttatttcattgaaagaatcacaac 3628750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 44882790 - 44882742
Alignment:
Q  145 tgtcgcatgatattgagggttggttggacttcttgttcactttttagtg 193  Q
    |||||||||||||||||||||| ||||||||| |||||| | |||||||    
T  44882790 tgtcgcatgatattgagggttgattggacttcctgttcattctttagtg 44882742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 33452655 - 33452701
Alignment:
Q  205 ttaagtctaatatccacaccccacttaaataaaaatatatatatgtta 252  Q
    |||||||||||||| ||||||| ||||||||||||||||| |||||||    
T  33452655 ttaagtctaatatc-acaccccgcttaaataaaaatatatgtatgtta 33452701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 400
Target Start/End: Complemental strand, 34524065 - 34523949
Alignment:
Q  292 agactctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgtataatta--------gtcaatttaaaaagttatttcattaa 383  Q
    ||||| || ||||||| ||| ||||||||| || | |||| |||||| |||||||||||||||| |        |||||||| ||||| ||||||||| |    
T  34524065 agactttagttctcctatctggacataaatctggtactatcaaaccacccccaatttgtataatcacttaatcagtcaatttgaaaagctatttcattga 34523966  T
Q  384 aagaatcacaactatca 400  Q
    |||||||||||| ||||    
T  34523965 aagaatcacaacaatca 34523949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 395
Target Start/End: Complemental strand, 39697984 - 39697941
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaac 395  Q
    |||||||||||||| ||||| ||||||||| |||||||||||||    
T  39697984 taattagtcaatttgaaaagctatttcattgaaagaatcacaac 39697941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 239
Target Start/End: Original strand, 42777615 - 42777649
Alignment:
Q  205 ttaagtctaatatccacaccccacttaaataaaaa 239  Q
    ||||||||||||||||||||| |||||||||||||    
T  42777615 ttaagtctaatatccacaccctacttaaataaaaa 42777649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 400
Target Start/End: Complemental strand, 43968109 - 43968068
Alignment:
Q  359 tcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    ||||||| ||||||||||||||| ||||||||||||| ||||    
T  43968109 tcaatttgaaaagttatttcattgaaagaatcacaacaatca 43968068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 3471618 - 3471666
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||| ||||||||| ||||||||||||| ||||    
T  3471618 taatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatca 3471666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 5869368 - 5869320
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||| ||||||||| ||||||||||||| ||||    
T  5869368 taatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatca 5869320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 12531577 - 12531625
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||||||||  ||||||||| ||||||||||||| ||||    
T  12531577 taatcagtcaatttaaaaatctatttcattgaaagaatcacaacaatca 12531625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 395
Target Start/End: Complemental strand, 36515211 - 36515159
Alignment:
Q  343 caatttgtataattagtcaatttaaaaagttatttcattaaaagaatcacaac 395  Q
    ||||||| ||||| ||| ||||||||||  ||||||||| |||||||||||||    
T  36515211 caatttgaataatcagttaatttaaaaaactatttcattgaaagaatcacaac 36515159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 43926369 - 43926321
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||| ||||||||| ||||||||||||| ||||    
T  43926369 taatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatca 43926321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 395
Target Start/End: Original strand, 32956725 - 32956836
Alignment:
Q  292 agactctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgta--------taattagtcaatttaaaaagttatttcattaa 383  Q
    |||||||| ||||||||||| ||||||||| || |||||| |||||| ||||||||| ||        |||| |||||||||| |||||||||||||| |    
T  32956725 agactctagttctcctttctggacataaatctgatgctatcaaaccacccccaatttttataatcatttaatcagtcaatttataaagttatttcattga 32956824  T
Q  384 aagaatcacaac 395  Q
    ||||||||||||    
T  32956825 aagaatcacaac 32956836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 400
Target Start/End: Original strand, 26633313 - 26633429
Alignment:
Q  292 agactctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgta--------taattagtcaatttaaaaagttatttcattaa 383  Q
    |||||||| |||| |||||| |||||||||||| ||||||||||||| |  |||||||||        |||| ||||||||| ||||| ||||||||| |    
T  26633313 agactctagttctactttctggacataaatttgatgctataaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaagctatttcattga 26633412  T
Q  384 aagaatcacaactatca 400  Q
    |||||||||||| ||||    
T  26633413 aagaatcacaacaatca 26633429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 30739141 - 30739189
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||||||||||||||||||||||||||| ||||    
T  30739141 taatcagtcaatttgaaaagttatttcattaaaagaatcacaacgatca 30739189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 395
Target Start/End: Complemental strand, 18895443 - 18895400
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaac 395  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  18895443 taatcagtcaatttaaaaagttatttcattgaaagaatcacaac 18895400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 396
Target Start/End: Complemental strand, 40738103 - 40737993
Alignment:
Q  294 actctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgtataatta--------gtcaatttaaaaagttatttcattaaaa 385  Q
    |||||| |||| |||| | |||||||||||| |||||| |||||| |  |||||||||||||||        |||||||||||||| ||||| ||| |||    
T  40738103 actctagttctacttttttgacataaatttgatgctatcaaaccaccatcaatttgtataattacttaatcagtcaatttaaaaagctattttattgaaa 40738004  T
Q  386 gaatcacaact 396  Q
    |||||||||||    
T  40738003 gaatcacaact 40737993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 395
Target Start/End: Original strand, 42312029 - 42312070
Alignment:
Q  354 attagtcaatttaaaaagttatttcattaaaagaatcacaac 395  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  42312029 attagtcaatttgaaaagctatttcattaaaagaatcacaac 42312070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 8358340 - 8358292
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||||||||||||| ||||| ||||||||||||| ||||    
T  8358340 taatcagtcaatttaaaaagttatctcattgaaagaatcacaacaatca 8358292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 395
Target Start/End: Original strand, 9479079 - 9479188
Alignment:
Q  294 actctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgtataatt--------agtcaatttaaaaagttatttcattaaaa 385  Q
    |||||| |||| |||||| |||||||||||| |||||| |||||| |  ||||||||||||||        ||||||||||||||  |||||| || |||    
T  9479079 actctagttctactttctggacataaatttgatgctatcaaaccaccatcaatttgtataattacttaatcagtcaatttaaaaaactatttcgttgaaa 9479178  T
Q  386 gaatcacaac 395  Q
    ||||||||||    
T  9479179 gaatcacaac 9479188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 44876201 - 44876153
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| |||||||||| |||| ||||||||||||||||||||||| ||||    
T  44876201 taatcagtcaatttagaaagctatttcattaaaagaatcacaacaatca 44876153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 11672447 - 11672493
Alignment:
Q  205 ttaagtctaatatccacaccccacttaaataaaaatatatatatgtta 252  Q
    |||| |||||||||||| ||||||||||||||||| ||||||||||||    
T  11672447 ttaaatctaatatccaccccccacttaaataaaaa-atatatatgtta 11672493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 6380285 - 6380244
Alignment:
Q  205 ttaagtctaatatccacaccccacttaaataaaaatatatat 246  Q
    ||||||||||||||||| ||| ||||||||||||| ||||||    
T  6380285 ttaagtctaatatccactccctacttaaataaaaaaatatat 6380244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Complemental strand, 33419158 - 33419121
Alignment:
Q  357 agtcaatttaaaaagttatttcattaaaagaatcacaa 394  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  33419158 agtcaatttgaaaagttatttcattgaaagaatcacaa 33419121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 1366027 - 1366075
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||||||||||||  ||||||||||||| ||||    
T  1366027 taatcagtcaatttgaaaagttatttcatagaaagaatcacaacaatca 1366075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 26282588 - 26282540
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||| ||||||||| ||||||||||||| ||||    
T  26282588 taatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatca 26282540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 33910082 - 33910130
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||| ||||||||| ||||||||||||| ||||    
T  33910082 taatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatca 33910130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 40001742 - 40001694
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||| ||||||||| ||||||||||||| ||||    
T  40001742 taatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatca 40001694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 400
Target Start/End: Original strand, 11088506 - 11088613
Alignment:
Q  292 agactctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgtataattagtcaatttaaaaagttatttc-attaaaagaatc 390  Q
    |||||||||||||||||  | ||||||||| || |||||  |||||| ||||||||| |||||| ||||||||| ||||| |||||| || |||||||||    
T  11088506 agactctaattctcctt--tggacataaatctgatgctaccaaaccacccccaatttatataatcagtcaatttgaaaagctatttcaataaaaagaatc 11088603  T
Q  391 acaactatca 400  Q
    ||||| ||||    
T  11088604 acaacaatca 11088613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 29401158 - 29401206
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||| ||||    
T  29401158 taatcagtcaatttgaaaagttatttcattgaaagaatcacaacaatca 29401206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 6360624 - 6360670
Alignment:
Q  205 ttaagtctaatatccacaccccacttaaataaaaatatatatatgtta 252  Q
    |||| |||||||||||| ||||||||||||||||| ||||||||||||    
T  6360624 ttaaatctaatatccaccccccacttaaataaaaa-atatatatgtta 6360670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 400
Target Start/End: Complemental strand, 30915480 - 30915364
Alignment:
Q  292 agactctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgtataatt--------agtcaatttaaaaagttatttcattaa 383  Q
    |||||||| |||| |||||| |||||||||||| |||||| |||||  |  ||||||||||||||        ||||||||| ||||| ||||| ||| |    
T  30915480 agactctagttctactttctggacataaatttgatgctatcaaacccccatcaatttgtataattacttaatcagtcaatttgaaaagctatttaattga 30915381  T
Q  384 aagaatcacaactatca 400  Q
    |||||||||||| ||||    
T  30915380 aagaatcacaacaatca 30915364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 57706 - 57754
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| |||||||||| |||| ||||||||| ||||||||||||| ||||    
T  57706 taatcagtcaatttagaaagctatttcattcaaagaatcacaacaatca 57754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 628141 - 628093
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||| ||||||||| ||||||||||||| ||||    
T  628141 taatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatca 628093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 12614762 - 12614714
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||| ||||||||| ||||||||||||| ||||    
T  12614762 taatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatca 12614714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 31861019 - 31861067
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||| ||||||||| ||||||||||||| ||||    
T  31861019 taatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatca 31861067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 352 - 395
Target Start/End: Complemental strand, 43154834 - 43154791
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaac 395  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  43154834 taatcagtcaatttaaaaagttatttcattaaaagaatcacaac 43154791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 400
Target Start/End: Original strand, 5545279 - 5545395
Alignment:
Q  292 agactctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgtataatta--------gtcaatttaaaaagttatttcattaa 383  Q
    ||||||||||||| || ||| |||||||||||| ||| || |||||| | |||||||||||||| |        ||||||||  |||| |||||||||||    
T  5545279 agactctaattcttctgtctggacataaatttgatgccatcaaaccaccaccaatttgtataatcacttaatcggtcaatttggaaagctatttcattaa 5545378  T
Q  384 aagaatcacaactatca 400  Q
    |||||||||||| ||||    
T  5545379 aagaatcacaacaatca 5545395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 21791593 - 21791545
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||| ||||    
T  21791593 taatcagtcaatttgaaaagttatttcattgaaagaatcacaacaatca 21791545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 10575569 - 10575521
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| |||||||||| |||||||||||||| ||| ||||||||| ||||    
T  10575569 taatcagtcaatttagaaagttatttcattgaaataatcacaacaatca 10575521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 11681788 - 11681740
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| |||||||||  |||||||||||||| ||||||||||||| ||||    
T  11681788 taatcagtcaatttggaaagttatttcattgaaagaatcacaacaatca 11681740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 11690067 - 11690019
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| |||||||||  |||||||||||||| ||||||||||||| ||||    
T  11690067 taatcagtcaatttggaaagttatttcattgaaagaatcacaacaatca 11690019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 352
Target Start/End: Original strand, 22423634 - 22423694
Alignment:
Q  292 agactctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgtat 352  Q
    |||||||| |||| |||||| |||||||||||| |||||| |||||| |  ||||||||||    
T  22423634 agactctagttctactttctggacataaatttgatgctatcaaaccaccatcaatttgtat 22423694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 53011730 - 53011778
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| |||||||||  |||| ||||||||||||||||||||||| ||||    
T  53011730 taatcagtcaatttggaaagctatttcattaaaagaatcacaacaatca 53011778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 292 - 395
Target Start/End: Complemental strand, 42009376 - 42009265
Alignment:
Q  292 agactctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgtataatta--------gtcaatttaaaaagttatttcattaa 383  Q
    ||||| || |||| |||||| |||||||||||| |||||| |||||| |  ||||||||||||| |        |||||||||||||||||||||||| |    
T  42009376 agactttagttctactttctggacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttaaaaagttatttcattga 42009277  T
Q  384 aagaatcacaac 395  Q
    ||||||||||||    
T  42009276 aagaatcacaac 42009265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 21596285 - 21596348
Alignment:
Q  292 agactctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgtataat 355  Q
    |||||||||||||||||||| |||||||||  | |||||| ||||||  |||||||||||||||    
T  21596285 agactctaattctcctttctggacataaatcagatgctatcaaaccactcccaatttgtataat 21596348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 355
Target Start/End: Complemental strand, 1649941 - 1649882
Alignment:
Q  296 tctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgtataat 355  Q
    |||| ||||| ||||||||||||||| || |||||| ||| || ||||||||||||||||    
T  1649941 tctagttctcttttctagacataaatctggtgctatcaaatcacccccaatttgtataat 1649882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 8364035 - 8364081
Alignment:
Q  205 ttaagtctaatatccacaccccacttaaataaaaatatatatatgtta 252  Q
    |||| |||||||||||| ||||||||||||||||| ||||||||||||    
T  8364035 ttaaatctaatatccaccccccacttaaataaaaa-atatatatgtta 8364081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 394
Target Start/End: Complemental strand, 19965992 - 19965884
Alignment:
Q  294 actctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgta--------taattagtcaatttaaaaagttatttcattaaaa 385  Q
    |||||||||||||||| | ||||||||| || |||||| ||||||   ||||||||||        |||||||| || || ||||| |||||||||||||    
T  19965992 actctaattctcctttttggacataaatctgatgctatcaaaccactgccaatttgtataatcacttaattagttaaattgaaaagctatttcattaaaa 19965893  T
Q  386 gaatcacaa 394  Q
    |||||||||    
T  19965892 gaatcacaa 19965884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 400
Target Start/End: Original strand, 15987225 - 15987266
Alignment:
Q  359 tcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||||||  |||||||||||||||||||||| ||||||||||    
T  15987225 tcaatttcgaaagttatttcattaaaagaattacaactatca 15987266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 400
Target Start/End: Complemental strand, 29387793 - 29387752
Alignment:
Q  359 tcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    ||||||| ||||||||||||||| ||||||||||||| ||||    
T  29387793 tcaatttgaaaagttatttcattgaaagaatcacaacaatca 29387752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 389
Target Start/End: Original strand, 54430570 - 54430607
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaat 389  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  54430570 taatcagtcaatttgaaaagttatttcattaaaagaat 54430607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 8364190 - 8364238
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| |||||||||  |||||||||||||| ||||||||||||| ||||    
T  8364190 taatcagtcaatttggaaagttatttcattgaaagaatcacaacaatca 8364238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 393
Target Start/End: Complemental strand, 23067766 - 23067730
Alignment:
Q  357 agtcaatttaaaaagttatttcattaaaagaatcaca 393  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  23067766 agtcaatttgaaaagttatttcatttaaagaatcaca 23067730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 41707101 - 41707053
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||| ||||||||| ||||||||||||| ||||    
T  41707101 taatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatca 41707053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 51939602 - 51939554
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||| ||||||||| ||||||||||||| ||||    
T  51939602 taatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatca 51939554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 29156208 - 29156256
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||||||||||||||||||| ||||||||||||| ||||    
T  29156208 taatcagtcaatttaaaaagttatttcattgaaagaatcacaacaatca 29156256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 354
Target Start/End: Original strand, 27351299 - 27351361
Alignment:
Q  292 agactctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgtataa 354  Q
    |||||||| |||||||||||  ||||||||||| |||||| |||||| | |||||||||||||    
T  27351299 agactctagttctcctttctgaacataaatttggtgctatcaaaccacctccaatttgtataa 27351361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 390
Target Start/End: Original strand, 33281692 - 33281730
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatc 390  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  33281692 taattagtcaatttaaaaagttatttcattgaaagaatc 33281730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 355
Target Start/End: Original strand, 23069172 - 23069233
Alignment:
Q  294 actctaattctcctttctagacataaatttgttgctataaaaccagccccaatttgtataat 355  Q
    ||||||||||||||||||  |||||||| || |||||  |||||| ||||||||||||||||    
T  23069172 actctaattctcctttctgaacataaatatgatgctagcaaaccacccccaatttgtataat 23069233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 13656228 - 13656276
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||| ||||    
T  13656228 taatcagtcaatttgaaaagttatttcattgaaagaatcacaacaatca 13656276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 19099360 - 19099312
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||||||||| ||||||||| ||||||||||||| ||||    
T  19099360 taatcagtcaatttaaaaagctatttcattgaaagaatcacaacaatca 19099312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 392
Target Start/End: Complemental strand, 7390446 - 7390406
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcac 392  Q
    |||| ||||||||||||||||||||||||  ||||||||||    
T  7390446 taatcagtcaatttaaaaagttatttcatcgaaagaatcac 7390406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 10591319 - 10591271
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||| ||||| ||||||||||||||| ||||||||||||| ||||    
T  10591319 taatcagttaatttgaaaagttatttcattgaaagaatcacaacaatca 10591271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 13474648 - 13474696
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||||| ||||||| ||||||||||||| ||||    
T  13474648 taatcagtcaatttgaaaagttgtttcattgaaagaatcacaacaatca 13474696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Complemental strand, 17513982 - 17513934
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||||||||||| | ||||||||||||| ||||    
T  17513982 taatcagtcaatttgaaaagttatttcactgaaagaatcacaacaatca 17513934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 20976003 - 20976051
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||| ||||||||| ||||||||||||| ||||    
T  20976003 taatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatca 20976051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 16728 - 16776
Alignment:
Q  352 taattagtcaatttaaaaagttatttcattaaaagaatcacaactatca 400  Q
    |||| ||||||||| ||||| ||||||||| ||||||||||||| ||||    
T  16728 taatcagtcaatttgaaaagctatttcattgaaagaatcacaacgatca 16776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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