View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0979-INSERTION-49 (Length: 424)

Name: NF0979-INSERTION-49
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0979-INSERTION-49
NF0979-INSERTION-49
[»] chr7 (2 HSPs)
chr7 (8-399)||(39979232-39979623)
chr7 (395-424)||(39979782-39979811)


Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 399
Target Start/End: Original strand, 39979232 - 39979623
Alignment:
Q  8 tttatagccaaaatactaagacctgataggtgaggaggtagttgagcatggtaaatgaaatttaatttctttgcagagcttgctagtcttgctgtcatca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39979232 tttatagccaaaatactaagacctgataggtgaggaggtagttgagcatggtaaatgatatttaatttctttgcagagcttgctagtcttgctgtcatca 39979331  T
Q  108 tatcagacacattactaccaaagacagtatatataaagtacnnnnnnnncttcaaactggcgtannnnnnnnatattaactctttgttctcgac-gaaaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||        ||||||||||||||||||| || | |||    
T  39979332 tatcagacacattactaccaaagacagtatatataaagtacttttttttcttcaaactggcgtattttttttatattaactctttgttctcaaccggaaa 39979431  T
Q  207 aggaccatggtaatctgaaattcgactgtgtggtaagtaagattagtcaagaattattctgcacaaaaatcgaactcaagttcatttgaactatttgttt 306  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  39979432 aggaccatggtaatctgaaatttgactgtgtggtaagtaagtttagtcaagaattattctacacaaaaatcgaactcaagttcatttgaactattcgttt 39979531  T
Q  307 ttggtgtagttcattaatcacttatctgattaacttaactcgcgtatatacacacacgtatgtataacttttaaaagagactgatgaatggga 399  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  39979532 ttggtgtagtttattaatcacttatctgattaacttaactcgcgtatatatacacacgtatgtataa-ttttaaaagagactgatgaatggga 39979623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 395 - 424
Target Start/End: Original strand, 39979782 - 39979811
Alignment:
Q  395 tgggatccaccgtgtccaggaggtgccctc 424  Q
    ||||||||||||||||||||||||||||||    
T  39979782 tgggatccaccgtgtccaggaggtgccctc 39979811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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