View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0979-INSERTION-58 (Length: 264)
Name: NF0979-INSERTION-58
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-58 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 11328787 - 11329039
Alignment:
| Q |
8 |
agatgctcctttctcctcatgtttcttaagagttagtcgtcttgctttctctaatgatttacaaatatcctcctcatcatctgcaaaaacttgagtttca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11328787 |
agatgctcctttctcctcatgtttcttaagagttagtcgtcttgctttctctaatgatttacaaatatcctcctcatcatctgcaaaaacttgagtttca |
11328886 |
T |
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| Q |
108 |
tcttcccctattttaacatacatagattattctggacgaagtaattcagaggcttaatctgctttagcataagcagaccggtaagcattatttctcattt |
207 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11328887 |
tcttcccctattttaacatacatagattgttctggacgaagtagttcagaggcttcatctgctttagcataagcagaccggtaagcattatttctcattt |
11328986 |
T |
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| Q |
208 |
cagtcgtcaatctttcctgttcgtctttgatggcttgcctctttgcatctttc |
260 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11328987 |
cagttgtcaatctttcctgttcgtctttgatggcttgcctctttgcatctttc |
11329039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 11486808 - 11487060
Alignment:
| Q |
8 |
agatgctcctttctcctcatgtttcttaagagttagtcgtcttgctttctctaatgatttacaaatatcctcctcatcatctgcaaaaacttgagtttca |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11486808 |
agatgctcctttctcctcatgtttcttaagagttagtcgtcttgctttctctaatgatttacaaatatcctcctcatcatctgcaaaaacttgagtttca |
11486907 |
T |
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| Q |
108 |
tcttcccctattttaacatacatagattattctggacgaagtaattcagaggcttaatctgctttagcataagcagaccggtaagcattatttctcattt |
207 |
Q |
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| T |
11486908 |
tcttcccctattttaacatacatagattgttctggacgaagtagttcagaggcttcatctgctttagcataagcagaccggtaagcattatttctcattt |
11487007 |
T |
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| Q |
208 |
cagtcgtcaatctttcctgttcgtctttgatggcttgcctctttgcatctttc |
260 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11487008 |
cagttgtcaatctttcctgttcgtctttgatggcttgcctctttgcatctttc |
11487060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 37375151 - 37375403
Alignment:
| Q |
8 |
agatgctcctttctcctcatgtttcttaagagttagtcgtcttgctttctctaatgatttacaaatatcctcctcatcatctgcaaaaacttgagtttca |
107 |
Q |
| |
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||||||||||||||| || ||||||||||||| ||| ||||||||||||||||| ||||||| || |||||| |||||||||||||||||| |||||||| |
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| T |
37375151 |
agatgctcctttctcttcctgtttcttaagagctagccgtcttgctttctctaacgatttacgaagatcctcatcatcatctgcaaaaactggagtttca |
37375250 |
T |
|
| Q |
108 |
tcttcccctattttaacatacatagattattctggacgaagtaattcagaggcttaatctgctttagcataagcagaccggtaagcattatttctcattt |
207 |
Q |
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|||||| || |||||||||| ||||| ||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37375251 |
tcttcctctgctttaacatacggagattgttctggacgaagtaatttggaggcttcatctgctttagcataagcagtttggtaagcattatttctcattt |
37375350 |
T |
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| Q |
208 |
cagtcgtcaatctttcctgttcgtctttgatggcttgcctctttgcatctttc |
260 |
Q |
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||| | ||||||||| ||||| |||||||||||||||||||| ||||||||| |
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| T |
37375351 |
cagctgccaatctttcttgttcatctttgatggcttgcctcttcgcatctttc |
37375403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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