View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0979-INSERTION-59 (Length: 241)

Name: NF0979-INSERTION-59
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0979-INSERTION-59
NF0979-INSERTION-59
[»] chr1 (3 HSPs)
chr1 (7-171)||(33858348-33858512)
chr1 (7-171)||(33922411-33922575)
chr1 (77-171)||(33185201-33185295)
[»] scaffold0018 (2 HSPs)
scaffold0018 (164-236)||(140199-140271)
scaffold0018 (164-236)||(148808-148880)
[»] chr5 (3 HSPs)
chr5 (91-171)||(30213162-30213242)
chr5 (164-236)||(24897524-24897596)
chr5 (164-236)||(24987130-24987202)
[»] chr7 (1 HSPs)
chr7 (76-121)||(43853990-43854034)
[»] chr2 (1 HSPs)
chr2 (78-157)||(43631698-43631778)


Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 171
Target Start/End: Complemental strand, 33858512 - 33858348
Alignment:
Q  7 attattaacctggaaaaccatcgaaacatagtaatcaatagcgctatagcggcaagaaaccgctacggaatctatcttcctatgttctttgttctctttt 106  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33858512 attattagcctggaaaaccatcgaaacatagtaatcaatagcgctatagcggcaagaaaccgctacggaatctatcttcctatgttctttgttctctttt 33858413  T
Q  107 ttagttcctctgttctttggtcttttggattaatgttttgattaagacttgtgaaattttcttgg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33858412 ttagttcctctgttctttggtcttttggattaatgttttgattaagacttgtgaaattttgttgg 33858348  T

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Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 171
Target Start/End: Original strand, 33922411 - 33922575
Alignment:
Q  7 attattaacctggaaaaccatcgaaacatagtaatcaatagcgctatagcggcaagaaaccgctacggaatctatcttcctatgttctttgttctctttt 106  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33922411 attattagcctggaaaaccatcgaaacatagtaatcaatagcgctatagcggcaagaaaccgctacggaatctatcttcctatgttctttgttctctttt 33922510  T
Q  107 ttagttcctctgttctttggtcttttggattaatgttttgattaagacttgtgaaattttcttgg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33922511 ttagttcctctgttctttggtcttttggattaatgttttgattaagacttgtgaaattttgttgg 33922575  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 171
Target Start/End: Complemental strand, 33185295 - 33185201
Alignment:
Q  77 tctatcttcctatgttctttgttctcttttttagttcctctgttctttggtcttttggatt-aatgttttgattaagacttgtgaaattttcttgg 171  Q
    ||||||||||| | |||||||||||| || | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  33185295 tctatcttcctctattctttgttctccttat-agttcctctgttctttggtcttttggatttaatgttttgattaagacttgtgaaattttgttgg 33185201  T

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Target: scaffold0018 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 140271 - 140199
Alignment:
Q  164 tttcttgggaatttgaatttaaattttctaaaggtctcattcatttccataaagtgtgttttaaatccaacaa 236  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  140271 tttctttggaatttgaatttaaattttctaaaggtctcattcatttccataaagtgtgttttaaatccaacaa 140199  T

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Target: scaffold0018; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 148880 - 148808
Alignment:
Q  164 tttcttgggaatttgaatttaaattttctaaaggtctcattcatttccataaagtgtgttttaaatccaacaa 236  Q
    |||||| ||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  148880 tttctttggaatttcaatttcaattttctaaaggtctcattcatttccatgaagcgtgttttaaatccaacaa 148808  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 30213242 - 30213162
Alignment:
Q  91 ttctttgttctcttttttagttcctctgttctttggtcttttgga-ttaatgttttgattaagacttgtgaaattttcttgg 171  Q
    ||||||||| ||||||| ||||||||||| ||||| ||||||||| |||||||||| | |||||||||||||||||| ||||    
T  30213242 ttctttgttttcttttt-agttcctctgtcctttgttcttttggatttaatgttttaactaagacttgtgaaattttgttgg 30213162  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 24897596 - 24897524
Alignment:
Q  164 tttcttgggaatttgaatttaaattttctaaaggtctcattcatttccataaagtgtgttttaaatccaacaa 236  Q
    |||||| |||||  ||||||||| ||||| || | || ||||||||| || ||||||||| ||||||||||||    
T  24897596 tttcttcggaataggaatttaaactttctgaaagccttattcatttctatgaagtgtgttctaaatccaacaa 24897524  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 24987202 - 24987130
Alignment:
Q  164 tttcttgggaatttgaatttaaattttctaaaggtctcattcatttccataaagtgtgttttaaatccaacaa 236  Q
    |||||| |||||  ||||||||| ||||| || | || ||||||||| || ||||||||| ||||||||||||    
T  24987202 tttctttggaataggaatttaaactttctgaaagccttattcatttctatgaagtgtgttctaaatccaacaa 24987130  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 43853990 - 43854034
Alignment:
Q  76 atctatcttcctatgttctttgttctcttttttagttcctctgttc 121  Q
    |||||||||||| |||||||||||||| ||||||||||||| ||||    
T  43853990 atctatcttcctctgttctttgttctc-tttttagttcctcggttc 43854034  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 43631778 - 43631698
Alignment:
Q  78 ctatcttcctat-gttctttgttctcttttttagttcctctgttctttggtcttttggatt-aatgttttgattaagacttg 157  Q
    |||||||||| | |||||||||||||||||| | ||| | ||||||||  ||||||||||| |||||||||||| |||||||    
T  43631778 ctatcttcctctagttctttgttctcttttt-atttcatatgttcttttttcttttggatttaatgttttgattgagacttg 43631698  T

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