View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0979-INSERTION-6 (Length: 328)

Name: NF0979-INSERTION-6
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0979-INSERTION-6
NF0979-INSERTION-6
[»] chr4 (1 HSPs)
chr4 (8-328)||(46876249-46876576)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 328
Target Start/End: Original strand, 46876249 - 46876576
Alignment:
Q  8 agatgttctttgtttggttctttgatggatggatgaaga---taatggttaatgtcgacatgtacaacctttgttttcnnnnnnnaggcctttatgggcg 104  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||| |||||||||||||||       |||||||||||||||    
T  46876249 agatgttctttgtttggttctttgatggatggatgaagaagataatggttaatgttgacatgcacaacctttgttttctttttttaggcctttatgggcg 46876348  T
Q  105 agt----ttatagtggtttggagattctctccttttgttctcttgctagccttttcacatcttgtgtttggggatgtgacataaaagattaaaaatacaa 200  Q
    |||    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46876349 agtgagtttatagtggtttggagattctctccttctgttctcttgctagccttttcacatcttgtgtttggggatgtgacataaaagattaaaaatacaa 46876448  T
Q  201 tctttggattaaagagaacttctctcatacttcaaaatatcataagtttcctttacgggaagaaataaaagaaagtaattccgcataatattgtctttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46876449 tctttggattaaagagaacttctctcatacttcaaaatatcataagtttcctttacgggaagaaataaaagaaagtaattccgcataatattgtctttca 46876548  T
Q  301 tatatgaagtaaaattttcaaataaaat 328  Q
    ||||||||||||||||||||||||||||    
T  46876549 tatatgaagtaaaattttcaaataaaat 46876576  T

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