View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0979-INSERTION-61 (Length: 263)
Name: NF0979-INSERTION-61
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-61 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 185
Target Start/End: Complemental strand, 823357 - 823180
Alignment:
| Q |
8 |
acatttacactcaaatgtttctacaactatatatcaccattgcaccttttagatccaccttacgtttatacatgtggctcaattatagagagacaactct |
107 |
Q |
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| T |
823357 |
acatttacactcaaatgtttctacaactatatatcaccattgcaccttttagatccaccttacgtttatacatgtggctcaattatagagagacaactct |
823258 |
T |
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| Q |
108 |
tccatgatttggagaatataatttttatttattaacaatcatggtaagttatattcaagtgccaattaactttgttga |
185 |
Q |
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| T |
823257 |
tccatgatttggagaatataatttttatttattaacaatcatggtaagttatattcaagtgccaattaactttgttga |
823180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 823177 - 823138
Alignment:
| Q |
211 |
gagagagataaataacttatacatggacaatttatacaca |
250 |
Q |
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| T |
823177 |
gagagagataaataacttatacatggacaatttatacaca |
823138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 27334997 - 27335043
Alignment:
| Q |
14 |
acactcaaatgtttctacaactatatatcaccattgcaccttttaga |
60 |
Q |
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| T |
27334997 |
acactcaaatgattttacaaccatatatcaccattgcaacttttaga |
27335043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 35105691 - 35105579
Alignment:
| Q |
21 |
aatgtttctacaactatatatcaccattgcaccttttagatccaccttacgtttatacatgtggctcaattatagagagacaactcttccatgatttgga |
120 |
Q |
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| T |
35105691 |
aatgtttctacaactatatatgaccattgcaccttttagaaccaccttaaatttctacatgtggctcaattatagagagaaaatccttccacaatttgga |
35105592 |
T |
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| Q |
121 |
gaatataattttt |
133 |
Q |
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| T |
35105591 |
gtatatatttttt |
35105579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 35105073 - 35105010
Alignment:
| Q |
129 |
tttttatttattaacaatcatggtaagttatattcaagtgccaat--taactttgttgatgcac |
190 |
Q |
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| T |
35105073 |
tttttatttattaacaattattgtatgttttattcatgtgtcaattataactttgttgatgcac |
35105010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 174
Target Start/End: Original strand, 5893202 - 5893345
Alignment:
| Q |
31 |
caactatatatcaccattgcaccttttagatccaccttacgtttatacatgtggctcaattatagagagacaa-ctcttccatgatttggagaatataat |
129 |
Q |
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| T |
5893202 |
caaccatatatcaccattgcaacttatagaactaccttacatttctctatgtggctccattatagagagaaaagcttttccataatctggagtatat-gt |
5893300 |
T |
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| Q |
130 |
ttttatttattaacaatcatggtaagttatattcaagtgccaatt |
174 |
Q |
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| T |
5893301 |
tattatatattaacgatcatagtaggttttattcaagtgccaatt |
5893345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 9412980 - 9413019
Alignment:
| Q |
211 |
gagagagataaataacttatacatggacaatttatacaca |
250 |
Q |
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| T |
9412980 |
gagagagagaaataacttatacatggacaatttatacaca |
9413019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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