View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0979-INSERTION-62 (Length: 121)
Name: NF0979-INSERTION-62
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-62 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 102; Significance: 4e-51; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 102; E-Value: 4e-51
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 118854 - 118967
Alignment:
| Q |
8 |
gatttggttcaagcttgttgtaaagttgcgtcattatttttggtgaagttaagaaattcaataattcaaagggtttgattttttgatttcttatttgaag |
107 |
Q |
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| T |
118854 |
gatttggttcaagcttgttgcaaagttgcgtcattatttttggtgaagttaagaaattcaataattcaaaggctttgatttgttgatttcttatttgaag |
118953 |
T |
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| Q |
108 |
aaactaattataaa |
121 |
Q |
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|||||||||||||| |
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| T |
118954 |
aaactaattataaa |
118967 |
T |
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Target: chr5 (Bit Score: 45; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 3427594 - 3427668
Alignment:
| Q |
8 |
gatttggttcaagcttgttgtaaagttgcgtcattattttt---ggtgaagttaagaaattcaataattcaaagg |
79 |
Q |
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||||||||||||| |||||| |||||||||||||| ||||| | ||||||||||||||||||||||||||||| |
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| T |
3427594 |
gatttggttcaagtttgttgcaaagttgcgtcattttttttttcgatgaagttaagaaattcaataattcaaagg |
3427668 |
T |
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