View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0979-INSERTION-65 (Length: 199)

Name: NF0979-INSERTION-65
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0979-INSERTION-65
NF0979-INSERTION-65
[»] chr5 (6 HSPs)
chr5 (8-199)||(41524201-41524392)
chr5 (8-199)||(41515250-41515441)
chr5 (14-196)||(41499447-41499629)
chr5 (16-196)||(41503642-41503822)
chr5 (8-94)||(41519353-41519439)
chr5 (16-97)||(41503993-41504074)


Alignment Details
Target: chr5 (Bit Score: 176; Significance: 5e-95; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 41524201 - 41524392
Alignment:
Q  8 ctcaactccagccaaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgat 107  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41524201 ctcaactccagccaaaacatttttatcgccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgat 41524300  T
Q  108 ttcctcagctccgaaacttcatgctccaatttaccaatcatttttctcaacacaccaagttcattattatcctccatcctcttttcattcaa 199  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  41524301 ttcctcagctccgaagcttcatgctccaatttaccaatcatttttctcaacacaccaagttgagtattatcctccatcctcttttcattcaa 41524392  T

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Target: chr5; HSP #2
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 41515250 - 41515441
Alignment:
Q  8 ctcaactccagccaaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgat 107  Q
    |||||| ||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  41515250 ctcaaccccagccaaagcattcttatcaccctccaatacacgaaccttatttctaagcgcatcaaaagcattgccatcatctaaccatttcttcttcgat 41515349  T
Q  108 ttcctcagctccgaaacttcatgctccaatttaccaatcatttttctcaacacaccaagttcattattatcctccatcctcttttcattcaa 199  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||    
T  41515350 ttcctcaactccgaaacttcatgctccaatttaccaatcattttcctcaatacaccaagttcattattatcccccatcctcttttcattcaa 41515441  T

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Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 41499447 - 41499629
Alignment:
Q  14 tccagccaaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgatttcctc 113  Q
    |||||||||| |||| ||||||||||||| ||||||||||||  | |  | | |||||  ||||||||||||||| |||||||| |||||| | ||||||    
T  41499447 tccagccaaatcattcttatcaccctccattacacgaaccttgcttcgtacctcatcatgagcattgctatcatcaaaccattttttcttcaacttcctc 41499546  T
Q  114 agctccgaaacttcatgctccaatttaccaatcatttttctcaacacaccaagttcattattatcctccatcctcttttcatt 196  Q
    | |||| ||||||||||||| |||||||||||||||| ||| | |||| ||||||||||||||||||||| | ||||||||||    
T  41499547 aactccaaaacttcatgctctaatttaccaatcatttctcttagcacaacaagttcattattatcctccagcatcttttcatt 41499629  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 41503642 - 41503822
Alignment:
Q  16 cagccaaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgatttcctcag 115  Q
    |||||||| ||||||||||||||||||  ||| |||||||  | | |||| |||||  |||| ||||||  |||||| |||| |||||| |  |||| |     
T  41503642 cagccaaatcatttttatcaccctccagaacatgaaccttgcttcgaagctcatcatgagcactgctattttctaacaattttttcttcaacctccttaa 41503741  T
Q  116 ctccgaaacttcatgctccaatttaccaatcatttttctcaacacaccaagttcattattatcctccatcctcttttcatt 196  Q
    |||| ||||||||||||| |||||||||||||||| ||| | |||| ||||||| ||||||||||||| | ||||||||||    
T  41503742 ctccaaaacttcatgctctaatttaccaatcatttctcttagcacaacaagttcgttattatcctccaccatcttttcatt 41503822  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 41519353 - 41519439
Alignment:
Q  8 ctcaactccagccaaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatctaacca 94  Q
    ||||| |||||||||| |||| || ||| |||||||||||| |||| |  | | |||| |||||| |||||| ||||||||||||||    
T  41519353 ctcaattccagccaaagcattcttttcaacctccaatacaccaaccatgcttcgaagctcatcaagagcattactatcatctaacca 41519439  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 41503993 - 41504074
Alignment:
Q  16 cagccaaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatctaaccattt 97  Q
    |||||||| ||||||| ||| |||||||||||| ||||||  |   |||| |||||| |||||| |||||||| ||||||||    
T  41503993 cagccaaatcatttttttcatcctccaatacaccaaccttcctttgaagctcatcaagagcatttctatcatcaaaccattt 41504074  T

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