View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0979-INSERTION-67 (Length: 84)
Name: NF0979-INSERTION-67
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-67 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 62; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-27
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 43777490 - 43777567
Alignment:
| Q |
8 |
ttaatcccatcagcttttttctctttccgatgatatgaaatcggatc-aatattacgaataacaatatatgagctatc |
84 |
Q |
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| T |
43777490 |
ttaatcccatcagcttctttctctttccgatgatatgaaatcggatcaaatattacgaataacaatatctgagctatc |
43777567 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 18159170 - 18159219
Alignment:
| Q |
35 |
cgatgatatgaaatcggatcaatattacgaataacaatatatgagctatc |
84 |
Q |
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| T |
18159170 |
cgatgatataaaatcggatcaatatcacgaataacaatatctgagctatc |
18159219 |
T |
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Target: scaffold0002 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 84
Target Start/End: Original strand, 419157 - 419204
Alignment:
| Q |
37 |
atgatatgaaatcggatcaatattacgaataacaatatatgagctatc |
84 |
Q |
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| T |
419157 |
atgatataaaatcgaatcaatatcacgaataacaatatctgagctatc |
419204 |
T |
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