View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0979-INSERTION-68 (Length: 64)
Name: NF0979-INSERTION-68
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0979-INSERTION-68 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 55; Significance: 2e-23; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 35235058 - 35235000
Alignment:
| Q |
6 |
caataagtaaaccagtaactcatacaaaattatagatatcagataacaaaaatatcagc |
64 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35235058 |
caataagtaaaccaataactcatacaaaattatagatatcagataacaaaaatatcagc |
35235000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-17
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 29258480 - 29258539
Alignment:
| Q |
5 |
acaataagtaaaccagtaactcatacaaaattatagatatcagataacaaaaatatcagc |
64 |
Q |
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||||||| ||||||| ||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
29258480 |
acaataaataaaccaataactcatacaaaattatagagattagataacaaaaatatcagc |
29258539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 29286606 - 29286552
Alignment:
| Q |
6 |
caataagtaaaccagtaactcatacaaaattatagatatcagataacaaaaatatc |
61 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| |
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| T |
29286606 |
caataagtaaaccaataactcatgcaaaattatagatatca-ataacaaaaatatc |
29286552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 29262357 - 29262303
Alignment:
| Q |
13 |
taaaccagtaactcatacaaaattataga---tatcagataacaaaaatatcagc |
64 |
Q |
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||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
29262357 |
taaaccaataactcatacaaaattatagatattattagataacaaaaatatcagc |
29262303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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