View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0979-INSERTION-7 (Length: 442)

Name: NF0979-INSERTION-7
Description: NF0979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0979-INSERTION-7
NF0979-INSERTION-7
[»] chr6 (4 HSPs)
chr6 (8-345)||(33694653-33694989)
chr6 (190-328)||(28138063-28138201)
chr6 (156-328)||(12938663-12938836)
chr6 (229-313)||(14532047-14532131)
[»] chr7 (9 HSPs)
chr7 (155-310)||(29258407-29258563)
chr7 (160-328)||(19436697-19436866)
chr7 (156-328)||(29833968-29834141)
chr7 (159-219)||(29243263-29243323)
chr7 (159-217)||(45972306-45972364)
chr7 (282-331)||(6442633-6442682)
chr7 (275-328)||(47327942-47327995)
chr7 (159-219)||(47327825-47327885)
chr7 (275-328)||(45972423-45972476)
[»] chr1 (8 HSPs)
chr1 (171-305)||(39241594-39241729)
chr1 (156-328)||(27286185-27286358)
chr1 (156-328)||(52385837-52386010)
chr1 (159-217)||(12981404-12981462)
chr1 (170-217)||(45348403-45348450)
chr1 (275-328)||(12981521-12981574)
chr1 (282-331)||(45325655-45325704)
chr1 (275-328)||(45348291-45348344)
[»] chr5 (8 HSPs)
chr5 (159-328)||(41413466-41413636)
chr5 (159-328)||(1828436-1828606)
chr5 (159-328)||(40313901-40314071)
chr5 (156-328)||(30624885-30625058)
chr5 (159-316)||(31482104-31482262)
chr5 (159-221)||(39884578-39884640)
chr5 (275-331)||(39884696-39884752)
chr5 (159-217)||(24788459-24788517)
[»] chr3 (17 HSPs)
chr3 (159-328)||(12938425-12938595)
chr3 (156-328)||(50650415-50650588)
chr3 (159-316)||(33216690-33216848)
chr3 (190-328)||(31658843-31658981)
chr3 (170-303)||(29833310-29833444)
chr3 (159-221)||(53282176-53282238)
chr3 (160-221)||(36950290-36950351)
chr3 (159-221)||(29703668-29703730)
chr3 (275-330)||(36950179-36950234)
chr3 (159-219)||(5232829-5232889)
chr3 (159-219)||(20104205-20104265)
chr3 (275-331)||(29703556-29703612)
chr3 (159-217)||(39833366-39833424)
chr3 (275-328)||(5232946-5232999)
chr3 (275-331)||(53282294-53282350)
chr3 (275-328)||(20104322-20104375)
chr3 (275-328)||(39833254-39833307)
[»] chr2 (12 HSPs)
chr2 (156-333)||(14096277-14096455)
chr2 (262-328)||(18977134-18977200)
chr2 (160-221)||(33755202-33755263)
chr2 (160-221)||(7089108-7089169)
chr2 (159-219)||(37078830-37078890)
chr2 (275-330)||(7089225-7089280)
chr2 (159-217)||(17690487-17690545)
chr2 (275-328)||(37078947-37079000)
chr2 (275-330)||(33755091-33755146)
chr2 (159-217)||(16429747-16429805)
chr2 (275-328)||(15330735-15330788)
chr2 (275-328)||(37261720-37261773)
[»] chr4 (13 HSPs)
chr4 (156-328)||(27292967-27293140)
chr4 (190-328)||(42976386-42976524)
chr4 (156-333)||(4919036-4919213)
chr4 (159-221)||(15531343-15531405)
chr4 (275-331)||(15531231-15531287)
chr4 (159-217)||(20133293-20133351)
chr4 (159-220)||(24228276-24228337)
chr4 (282-331)||(45989630-45989679)
chr4 (275-328)||(55919410-55919463)
chr4 (275-331)||(28679508-28679564)
chr4 (159-213)||(55919526-55919580)
chr4 (275-328)||(20133410-20133463)
chr4 (282-331)||(42069066-42069115)
[»] scaffold0016 (1 HSPs)
scaffold0016 (8-157)||(85759-85895)
[»] chr8 (6 HSPs)
chr8 (159-316)||(13802715-13802873)
chr8 (160-221)||(3879599-3879660)
chr8 (275-330)||(3879488-3879543)
chr8 (170-219)||(30945584-30945633)
chr8 (226-328)||(23613575-23613678)
chr8 (159-217)||(531567-531625)
[»] scaffold0166 (1 HSPs)
scaffold0166 (159-217)||(30842-30900)


Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 345
Target Start/End: Original strand, 33694653 - 33694989
Alignment:
Q  8 cacttagtgtattgaaattcttccaaattctactactgttgtagcttggtttaaggctagtgatttagtttgctct-atatatatacgaggattatgtcg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||| |    
T  33694653 cacttagtgtattgaaattcttccaaattctactactgttgtagcttggtttaaggctagcgatttagtttgctcttagatatatacgaggattatgtgg 33694752  T
Q  107 ggtgatgtttgaaggtgagttttaaagtgatatgctagatacttttttcaattgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtg 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||  ||||||||| | |||||    
T  33694753 ggtgatgtttgaaggtgagttttaaagtgatatgctagatacttttgtcaattgactttttcggtgaagtcgtttgaatggaccaatcagattttaagtg 33694852  T
Q  207 atgacacgtcagataatgaacaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttact 306  Q
    ||||||||| |||||||| | ||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |    
T  33694853 atgacacgttagataatggaaaaattttaatatggatcacttgctccatatgttccatcatagacaaatttatttcatgatcttaacagttagatttatt 33694952  T
Q  307 tggcctctatattattgtggtatacgccctctacatatg 345  Q
    ||||||||||||||||||||  ||| |||||||||||||    
T  33694953 tggcctctatattattgtgg--tacaccctctacatatg 33694989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 190 - 328
Target Start/End: Complemental strand, 28138201 - 28138063
Alignment:
Q  190 caatcagatatcaagtgatgacacgtcagataatgaacaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatct 289  Q
    |||||| || |||||| ||||||||||||||   | ||||||| ||||||||| |||||||||||||||| ||| ||| |||||||||||||||||||||    
T  28138201 caatcaaatttcaagtcatgacacgtcagatgtaggacaaattttaatatggaccacttgctccatatgtcccatcatggacaagtttatttcatgatct 28138102  T
Q  290 taacagttagatttacttggcctctatattattgtggta 328  Q
    |||  ||||||||||||||| ||||||||||||||||||    
T  28138101 taaaggttagatttacttggtctctatattattgtggta 28138063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 156 - 328
Target Start/End: Original strand, 12938663 - 12938836
Alignment:
Q  156 aattgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataatga-acaaattctaatatggatcacttgctcca 254  Q
    |||||||||||| ||||||||||||| | |    ||||||||| | ||| |||||||||||||||  ||  ||||||| |||||||||||||||||| ||    
T  12938663 aattgacttttttagtgaagtcgtttaattcaaccaatcagattttaagcgatgacacgtcagatgttgggacaaattttaatatggatcacttgcttca 12938762  T
Q  255 tatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    |||||||||||||||||||||||||||||  |||||||| |||||||||  |||| |||||| |||||||||||    
T  12938763 tatgttccaccatagacaagtttatttcaaaatcttaacggttagatttgtttggtctctatgttattgtggta 12938836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 313
Target Start/End: Complemental strand, 14532131 - 14532047
Alignment:
Q  229 aattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctc 313  Q
    |||||||||||| |  |||||||| ||||||| |||||| |||| ||||| |||| ||||||||  |||||||||  ||||||||    
T  14532131 aattctaatatgaacaacttgctctatatgtttcaccatggacaggtttacttcacgatcttaatggttagatttgtttggcctc 14532047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 155 - 310
Target Start/End: Original strand, 29258407 - 29258563
Alignment:
Q  155 caattgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataatgaacaaattctaatatggatcacttgctcca 254  Q
    |||||||||| |||  || ||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  29258407 caattgacttcttcgatgcagttgtttgaatgggccaatcagatttcaagtgatgacacgtcagataatggacaaattctaacatggatcacttgctcca 29258506  T
Q  255 tatgttccaccatagacaagtttatttcatgatc-ttaacagttagatttacttggc 310  Q
    | ||||||||| | |||||||||||||||| ||| ||||| ||||||||||||||||    
T  29258507 tgtgttccaccgtggacaagtttatttcataatctttaacggttagatttacttggc 29258563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 160 - 328
Target Start/End: Original strand, 19436697 - 19436866
Alignment:
Q  160 gactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataatga-acaaattctaatatggatcacttgctccatatg 258  Q
    ||||||||| |||||||||||| | |  | ||||||||| |||||  |||| |||||| ||  ||  |||||||||||||||||||||||| | ||||||    
T  19436697 gactttttcggtgaagtcgtttaattcagccaatcagatttcaagccatgatacgtcatatgttgggacaaattctaatatggatcacttgtttcatatg 19436796  T
Q  259 ttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    ||||||||||||||||||||||||| |||||||||||||||||||  |||| |||||| |||||||||||    
T  19436797 ttccaccatagacaagtttatttcaagatcttaacagttagatttgtttggtctctatgttattgtggta 19436866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 156 - 328
Target Start/End: Complemental strand, 29834141 - 29833968
Alignment:
Q  156 aattgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataatga-acaaattctaatatggatcacttgctcca 254  Q
    ||||||||||||  || ||||||||| | |  | ||||||||| |||||  |||||| |||||||  ||  ||||| |||||||||||||||||||| ||    
T  29834141 aattgacttttttggtaaagtcgtttaattcagccaatcagatttcaagccatgacatgtcagatgttgggacaaactctaatatggatcacttgcttca 29834042  T
Q  255 tatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||  |||| |||||| |||||||||||    
T  29834041 tatgttccaccatagacaagtttatttcaagatcttaacagttagatttgtttggtctctatgttattgtggta 29833968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 29243263 - 29243323
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcaga 219  Q
    |||||| ||| ||||||||||||||||||||||||||||| | || |||||||||||||||    
T  29243263 tgacttcttcggtgaagtcgtttgaatgggtcaatcagattttaaatgatgacacgtcaga 29243323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 45972306 - 45972364
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtca 217  Q
    |||||| ||| ||||||||||||||||||| ||||||||| | || |||||||||||||    
T  45972306 tgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 45972364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 331
Target Start/End: Original strand, 6442633 - 6442682
Alignment:
Q  282 catgatcttaacagttagatttacttggcctctatattattgtggtatac 331  Q
    |||||||||||| |||||||||| |||| |||||| ||||||||||||||    
T  6442633 catgatcttaactgttagatttaattggtctctatgttattgtggtatac 6442682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 47327942 - 47327995
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    |||||||||||||||||| |||||||||||||||  || ||| |||||||||||    
T  47327942 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggta 47327995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 47327825 - 47327885
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcaga 219  Q
    |||||| ||| |||||||||| |||||||| ||||||||| | ||| ||||||||||||||    
T  47327825 tgacttcttcggtgaagtcgtctgaatgggccaatcagattttaagcgatgacacgtcaga 47327885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 45972423 - 45972476
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||||    
T  45972423 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggta 45972476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 171 - 305
Target Start/End: Original strand, 39241594 - 39241729
Alignment:
Q  171 tgaagtcgtttgaatggg-tcaatcagatatcaagtgatgacacgtcagataatga-acaaattctaatatggatcacttgctccatatgttccaccata 268  Q
    |||||||||||||||||| |||||||||| | ||||||| |||||||||||  ||| ||||||||||||||| |||||||||| ||||||||||||||||    
T  39241594 tgaagtcgtttgaatggggtcaatcagattttaagtgataacacgtcagatgttgagacaaattctaatatg-atcacttgcttcatatgttccaccata 39241692  T
Q  269 gacaagtttatttcatgatcttaacagttagatttac 305  Q
    ||||||||||||||||||||||||| |||||||||||    
T  39241693 gacaagtttatttcatgatcttaacggttagatttac 39241729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 156 - 328
Target Start/End: Original strand, 27286185 - 27286358
Alignment:
Q  156 aattgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataatgaacaaattct-aatatggatcacttgctcca 254  Q
    ||||||||||||| |||||||||||| | |  | ||||||||| |||||  ||||||||||||||  ||   ||||| | ||||||||||||||||| ||    
T  27286185 aattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagccatgacacgtcagatgttgggaaaatttttaatatggatcacttgcttca 27286284  T
Q  255 tatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    |||||||||||||||||||||||||||||  |||||||| |||||||||  |||| |||||| |||||||||||    
T  27286285 tatgttccaccatagacaagtttatttcaaaatcttaacggttagatttgtttggtctctatgttattgtggta 27286358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 156 - 328
Target Start/End: Complemental strand, 52386010 - 52385837
Alignment:
Q  156 aattgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataatga-acaaattctaatatggatcacttgctcca 254  Q
    ||||||||||||| |||||||||||| | |  | ||||||||| |||||  ||||||| ||| ||  ||  ||||||||||| ||||||||| || | ||    
T  52386010 aattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagccatgacacatcatatgttgggacaaattctaaaatggatcacgtgtttca 52385911  T
Q  255 tatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    ||||||||||||||||||||||||||||| |||||| || |||||||||  |||  |||||| |||||||||||    
T  52385910 tatgttccaccatagacaagtttatttcaagatctttacggttagatttgtttgatctctatgttattgtggta 52385837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 12981404 - 12981462
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtca 217  Q
    |||||| ||| ||||||||||||||||||| ||||||||| | || |||||||||||||    
T  12981404 tgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 12981462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 45348450 - 45348403
Alignment:
Q  170 gtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtca 217  Q
    |||||||||||||||| |||||||||||| | || |||||||||||||    
T  45348450 gtgaagtcgtttgaataggtcaatcagattttaaatgatgacacgtca 45348403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 12981521 - 12981574
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||||    
T  12981521 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggta 12981574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 45325704 - 45325655
Alignment:
Q  282 catgatcttaacagttagatttacttggcctctatattattgtggtatac 331  Q
    |||||||||||| |||||||||| || | |||||| ||||||||||||||    
T  45325704 catgatcttaacggttagatttaattagtctctatgttattgtggtatac 45325655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 328
Target Start/End: Complemental strand, 45348344 - 45348291
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||||    
T  45348344 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggta 45348291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 159 - 328
Target Start/End: Complemental strand, 41413636 - 41413466
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataat-gaacaaattctaatatggatcacttgctccatat 257  Q
    |||||| ||| ||||||||||||||||||  ||||||||| |||||  ||||||||||||||  | | ||||||| |||||||||||||||||| |||||    
T  41413636 tgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagatgttaggacaaattataatatggatcacttgcttcatat 41413537  T
Q  258 gttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    |||||||| | ||||||||||||||| ||||||||| ||||| |||||||||  ||||| |||||||||||    
T  41413536 gttccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtggta 41413466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 159 - 328
Target Start/End: Original strand, 1828436 - 1828606
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagata--atgaacaaattctaatatggatcacttgctccata 256  Q
    |||||| ||| ||||||||||||||||||  ||||||||| |||||  ||||||||||||||   |||| |||||| |||||||||||||||||| ||||    
T  1828436 tgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagatgttatga-caaattataatatggatcacttgcttcata 1828534  T
Q  257 tgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    ||||||||| | ||||||||||||||| ||||||||| ||||| |||||||||  ||||| |||||||||||    
T  1828535 tgttccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtggta 1828606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 159 - 328
Target Start/End: Original strand, 40313901 - 40314071
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataat-gaacaaattctaatatggatcacttgctccatat 257  Q
    |||||| ||| ||||||||||||||||||  ||||||||| |||||  ||||||||||||||  | | |||||||  ||||||||||||||||| |||||    
T  40313901 tgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagatgttaggacaaattacaatatggatcacttgcttcatat 40314000  T
Q  258 gttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    |||||||| | ||||||||||||||| ||||||||| ||||| |||||||||  ||||| |||||||||||    
T  40314001 gttccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtggta 40314071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 156 - 328
Target Start/End: Original strand, 30624885 - 30625058
Alignment:
Q  156 aattgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataatga-acaaattctaatatggatcacttgctcca 254  Q
    |||||||||||| ||||||||||||| | |    ||||||||| |||||| ||||||||||||||  ||  | ||||| |||||||||||||||||| ||    
T  30624885 aattgacttttttagtgaagtcgtttaattcaaccaatcagatttcaagtcatgacacgtcagatgttgggataaattttaatatggatcacttgcttca 30624984  T
Q  255 tatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    |||||||||||||||||||||||||||||  || ||||| |||||||||  |||| |||||| |||||||||||    
T  30624985 tatgttccaccatagacaagtttatttcaaaattttaacggttagatttgtttggtctctatgttattgtggta 30625058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 159 - 316
Target Start/End: Complemental strand, 31482262 - 31482104
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcaga--taatgaacaaattctaatatggatcacttgctccata 256  Q
    |||||| ||| || |||||||||||||| | |||||| || | |||||||||||| |||||  ||| || |||||| |||||||||||||||||||||||    
T  31482262 tgacttcttcggtaaagtcgtttgaatgagccaatcaaattttaagtgatgacacttcagaagtaagga-caaattataatatggatcacttgctccata 31482164  T
Q  257 tgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctat 316  Q
    ||||||||||||||||  |||| |||||||||||||  |||||||||  |||| ||||||    
T  31482163 tgttccaccatagacagatttacttcatgatcttaatggttagatttgtttggtctctat 31482104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 39884578 - 39884640
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagata 221  Q
    |||||||||| ||||||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  39884578 tgactttttcggtgaagtcgtttgaatggaccaatcagatttcaagtgatgacacgtcagata 39884640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 39884696 - 39884752
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatac 331  Q
    ||||||||||||||||||  ||||||||||||| | |||||| ||||||||||||||    
T  39884696 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggtatac 39884752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 24788517 - 24788459
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtca 217  Q
    |||||| ||| ||||||||||||||||||| ||||||||| | || |||||||||||||    
T  24788517 tgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 24788459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 159 - 328
Target Start/End: Original strand, 12938425 - 12938595
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataat-gaacaaattctaatatggatcacttgctccatat 257  Q
    |||||| ||| ||||||||||||||||||  ||||||||| |||||  ||||||||||||||  | | ||||||| |||||||||||||||||| |||||    
T  12938425 tgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagatgttaggacaaattataatatggatcacttgcttcatat 12938524  T
Q  258 gttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    |||||||| | ||||||||||||||| ||||||||| ||||| |||||||||  ||||| |||||||||||    
T  12938525 gttccaccgtggacaagtttatttcaagatcttaacggttaggtttacttggtgtctatgttattgtggta 12938595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 156 - 328
Target Start/End: Complemental strand, 50650588 - 50650415
Alignment:
Q  156 aattgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataatga-acaaattctaatatggatcacttgctcca 254  Q
    ||||||||||||| || ||||||||| | |  | ||||||||| |||||  ||||||||||||||  ||  |||||||||||||||||||||||| | ||    
T  50650588 aattgactttttcggtaaagtcgtttaattcagccaatcagatttcaagccatgacacgtcagatgttgggacaaattctaatatggatcacttgtttca 50650489  T
Q  255 tatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||  |||| |||||| |||||||||||    
T  50650488 tatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggta 50650415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 159 - 316
Target Start/End: Complemental strand, 33216848 - 33216690
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtc--agataatgaacaaattctaatatggatcacttgctccata 256  Q
    |||||| ||| ||||||||||||||||| | ||||||||| | |||||||||||||||  |  ||||| ||||||| |||||||||||||||||||||||    
T  33216848 tgacttcttcggtgaagtcgtttgaatgagccaatcagattttaagtgatgacacgtcctaagtaatg-acaaattataatatggatcacttgctccata 33216750  T
Q  257 tgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctat 316  Q
    ||||||||||||||||  |||| |||||||||||||  |||||||||  |||||||||||    
T  33216749 tgttccaccatagacagatttacttcatgatcttaatggttagatttgtttggcctctat 33216690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 190 - 328
Target Start/End: Complemental strand, 31658981 - 31658843
Alignment:
Q  190 caatcagatatcaagtgatgacacgtcagataatgaacaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatct 289  Q
    ||||||||| ||||| |||||||| ||| ||   | | ||||||||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||    
T  31658981 caatcagatttcaagagatgacacatcacatgtaggataaattctaatatggatcacttgctccataagtcccaccatagacaagtttcttttatgatct 31658882  T
Q  290 taacagttagatttacttggcctctatattattgtggta 328  Q
    |||| ||||||||||||||| |||||| |||||||||||    
T  31658881 taacggttagatttacttggtctctatgttattgtggta 31658843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 170 - 303
Target Start/End: Original strand, 29833310 - 29833444
Alignment:
Q  170 gtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcaga--taatgaacaaattctaatatggatcacttgctccatatgttccaccat 267  Q
    |||||||||||||||||   ||||||||| | ||||||||||||||||||  ||| || |||||| ||||||||||||||||||||||||||||||||||    
T  29833310 gtgaagtcgtttgaatgaaccaatcagattttaagtgatgacacgtcagaagtaagga-caaattataatatggatcacttgctccatatgttccaccat 29833408  T
Q  268 agacaagtttatttcatgatcttaacagttagattt 303  Q
    |||||  |||| || ||||||||||  |||||||||    
T  29833409 agacagatttacttgatgatcttaatggttagattt 29833444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 53282176 - 53282238
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagata 221  Q
    |||||| ||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  53282176 tgacttcttcggtgaagtcgtttgaatgggccaatcagatttcaagtgatgacacgtcagata 53282238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 36950351 - 36950290
Alignment:
Q  160 gactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagata 221  Q
    ||||||||| ||||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  36950351 gactttttcggtgaagtcgtttgaatgggccaattagatttcaagtgatgacacgtcagata 36950290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 29703730 - 29703668
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagata 221  Q
    |||||||||| ||||||||||||||||||  ||||||||| ||||||||||||||||| ||||    
T  29703730 tgactttttcggtgaagtcgtttgaatggaccaatcagatttcaagtgatgacacgtcggata 29703668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 330
Target Start/End: Complemental strand, 36950234 - 36950179
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtata 330  Q
    ||||||||||||||||||  ||||||||||||||| |||||| |||||||||||||    
T  36950234 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtata 36950179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 5232829 - 5232889
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcaga 219  Q
    |||||| ||| |||||||||| |||||||| ||||||||| | ||||||||||||||||||    
T  5232829 tgacttcttcggtgaagtcgtctgaatgggccaatcagattttaagtgatgacacgtcaga 5232889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 20104205 - 20104265
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcaga 219  Q
    |||||||||| ||||| |||||||||| || ||||||||| | ||||||||||||||||||    
T  20104205 tgactttttcggtgaaatcgtttgaataggccaatcagattttaagtgatgacacgtcaga 20104265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 29703612 - 29703556
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatac 331  Q
    ||||||||||||||||||  ||||||||||||| | |||||| ||||||||||||||    
T  29703612 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggtatac 29703556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 39833424 - 39833366
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtca 217  Q
    |||||| ||| ||||||||||||||||||| ||||||||| | || |||||||||||||    
T  39833424 tgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 39833366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 5232946 - 5232999
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    |||||||||||||||||| |||||||||||||||  || ||| |||||||||||    
T  5232946 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggta 5232999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 53282294 - 53282350
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatac 331  Q
    |||||||||| |||||||  ||||||||||||| | |||||| ||||||||||||||    
T  53282294 tttatttcattatcttaatggttagatttacttagtctctatgttattgtggtatac 53282350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 20104322 - 20104375
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    ||||||||||||||||||  ||||||||||||||  || ||| |||||||||||    
T  20104322 tttatttcatgatcttaatggttagatttacttgatctttatgttattgtggta 20104375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 328
Target Start/End: Complemental strand, 39833307 - 39833254
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||||    
T  39833307 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggta 39833254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 4e-39; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 156 - 333
Target Start/End: Original strand, 14096277 - 14096455
Alignment:
Q  156 aattgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataatga-acaaattctaatatggatcacttgctcca 254  Q
    ||||||||||||| |||||||||||| | |  | ||||||||| |||||  ||||||||||||||  ||  |||||||||||||||||||||||| | ||    
T  14096277 aattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagacatgacacgtcagatgttgggacaaattctaatatggatcacttgtttca 14096376  T
Q  255 tatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgc 333  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||  |||| ||||||  |||||||||| ||||    
T  14096377 tatgttccaccatagacaagtttatttcaagatcttaaccgttagatttgtttggtctctatgatattgtggtacacgc 14096455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 262 - 328
Target Start/End: Complemental strand, 18977200 - 18977134
Alignment:
Q  262 caccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||    
T  18977200 caccatggacaagtttatttcatgatcttaacagttagatttacttagtctctatgttattgtggta 18977134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 33755263 - 33755202
Alignment:
Q  160 gactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagata 221  Q
    ||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  33755263 gactttttcggtgaagtcgtttgaatgggtcaattagatttcaagtgatgacacgtcagata 33755202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 7089108 - 7089169
Alignment:
Q  160 gactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagata 221  Q
    |||||||||  |||||||||||||||||| |||| |||| ||||||||||||||||||||||    
T  7089108 gactttttcgatgaagtcgtttgaatgggccaattagatttcaagtgatgacacgtcagata 7089169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 37078830 - 37078890
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcaga 219  Q
    |||||| ||| |||||||||| |||||||| ||||||||| | ||||||||||||||||||    
T  37078830 tgacttcttcggtgaagtcgtctgaatgggccaatcagattttaagtgatgacacgtcaga 37078890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 330
Target Start/End: Original strand, 7089225 - 7089280
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtata 330  Q
    ||||||||||||||||||  ||||||||||||||  |||||| |||||||||||||    
T  7089225 tttatttcatgatcttaatggttagatttacttgatctctatgttattgtggtata 7089280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 17690487 - 17690545
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtca 217  Q
    |||||| ||| ||||||||||||||||||| ||||||||| | || |||||||||||||    
T  17690487 tgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 17690545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 37078947 - 37079000
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    |||||||||||||||||| |||||||||||||||  || ||| |||||||||||    
T  37078947 tttatttcatgatcttaatagttagatttacttgatctttatgttattgtggta 37079000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 330
Target Start/End: Complemental strand, 33755146 - 33755091
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtata 330  Q
    ||||||||||||| ||||  ||||||||||||||| || ||| |||||||||||||    
T  33755146 tttatttcatgatattaatggttagatttacttggtctatatgttattgtggtata 33755091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 16429747 - 16429805
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtca 217  Q
    |||||| ||| |||||||||||||||| || ||||||||| | || |||||||||||||    
T  16429747 tgacttcttcggtgaagtcgtttgaataggccaatcagattttaaatgatgacacgtca 16429805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 15330735 - 15330788
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||||    
T  15330735 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggta 15330788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 328
Target Start/End: Complemental strand, 37261773 - 37261720
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||||    
T  37261773 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggta 37261720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 156 - 328
Target Start/End: Original strand, 27292967 - 27293140
Alignment:
Q  156 aattgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataatga-acaaattctaatatggatcacttgctcca 254  Q
    ||||||||||||| |||||||||||| | |  | ||||||||| |||||  ||||||||||| ||  ||  |||||||||||||||||||||||| | ||    
T  27292967 aattgactttttcggtgaagtcgtttaattcagccaatcagatttcaagccatgacacgtcatatgttgggacaaattctaatatggatcacttgtttca 27293066  T
Q  255 tatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||  |||| |||||| |||||||||||    
T  27293067 tatgttccaccatagacaagtttatttcaagatcttaacggttagatttgtttggtctctatgttattgtggta 27293140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 190 - 328
Target Start/End: Original strand, 42976386 - 42976524
Alignment:
Q  190 caatcagatatcaagtgatgacacgtcagataatgaacaaattctaatatggatcacttgctccatatgttccaccatagacaagtttatttcatgatct 289  Q
    ||||||||| ||||| |||||||||||| ||   ||| ||||| ||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||    
T  42976386 caatcagatttcaagagatgacacgtcacatgtagaataaattttaatatggatcacttgctccataagtcccaccatagacaagtttcttttatgatct 42976485  T
Q  290 taacagttagatttacttggcctctatattattgtggta 328  Q
    |||| ||||||||||||||| |||||| ||| |||||||    
T  42976486 taacggttagatttacttggtctctatgttaatgtggta 42976524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 156 - 333
Target Start/End: Original strand, 4919036 - 4919213
Alignment:
Q  156 aattgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagataatga-acaaattctaatatggatcacttgctcca 254  Q
    ||||||||||||| |||||||||||  | |  | ||||||||| |||||  ||||||||||||||  ||  |||||||||||||||||||||||| | ||    
T  4919036 aattgactttttcggtgaagtcgtta-attcagccaatcagatttcaagccatgacacgtcagatgttgggacaaattctaatatggatcacttgtttca 4919134  T
Q  255 tatgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatacgc 333  Q
    ||||||||||||||||||||||||||||| ||||||||  |||||||||  |||| ||||||  |||||||||| ||||    
T  4919135 tatgttccaccatagacaagtttatttcaagatcttaatggttagatttgtttggtctctatgatattgtggtacacgc 4919213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 15531405 - 15531343
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagata 221  Q
    ||||||||||||||||||||||||||||   ||||||||| ||||||||||| ||||||||||    
T  15531405 tgactttttcagtgaagtcgtttgaatgaaccaatcagatttcaagtgatgatacgtcagata 15531343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 15531287 - 15531231
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatac 331  Q
    ||||||||||||||||||  ||||||||||||| | |||||| ||||||||||||||    
T  15531287 tttatttcatgatcttaatggttagatttacttagtctctatgttattgtggtatac 15531231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 20133293 - 20133351
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtca 217  Q
    |||||| ||| ||||||||||||||||||| ||||||||| | || |||||||||||||    
T  20133293 tgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 20133351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 24228337 - 24228276
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagat 220  Q
    |||||| ||| ||||||||||||||||||  ||||||||| |||||  ||||||||||||||    
T  24228337 tgacttcttcggtgaagtcgtttgaatggaccaatcagatttcaagccatgacacgtcagat 24228276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 45989679 - 45989630
Alignment:
Q  282 catgatcttaacagttagatttacttggcctctatattattgtggtatac 331  Q
    |||||||||||| |||||||||| |||| |||||| ||||||||||||||    
T  45989679 catgatcttaacggttagatttaattggtctctatgttattgtggtatac 45989630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 328
Target Start/End: Complemental strand, 55919463 - 55919410
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    ||||||||||||| |||| |||||||||||||||  |||||| |||||||||||    
T  55919463 tttatttcatgattttaatagttagatttacttgatctctatgttattgtggta 55919410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 331
Target Start/End: Original strand, 28679508 - 28679564
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtatac 331  Q
    ||||||| |||||||||| ||||| |||||||||  |||||| ||||||||||||||    
T  28679508 tttattttatgatcttaatagttaaatttacttgatctctatgttattgtggtatac 28679564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 55919580 - 55919526
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacac 213  Q
    |||||| ||| ||||||||||||||||||| ||||||||| | || |||||||||    
T  55919580 tgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacac 55919526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 328
Target Start/End: Original strand, 20133410 - 20133463
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggta 328  Q
    ||||||||||||| ||||  ||||||||||||||  |||||| |||||||||||    
T  20133410 tttatttcatgattttaatggttagatttacttgatctctatgttattgtggta 20133463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 42069115 - 42069066
Alignment:
Q  282 catgatcttaacagttagatttacttggcctctatattattgtggtatac 331  Q
    |||||||||||| |||||||||| |||  |||||| ||||||||||||||    
T  42069115 catgatcttaacggttagatttaattgatctctatgttattgtggtatac 42069066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 85895 - 85759
Alignment:
Q  8 cacttagtgtattgaaattcttccaaattctactactgttgtagcttggtttaaggctagtgatttagtttgctctatatatatacgaggattatgtcgg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||             |||||||||| ||    
T  85895 cacttagtgtattgaaattcttccaaattctactactgttgtagcttggtttaaggctagcgatttagtttgct-------------aggattatgtggg 85809  T
Q  108 gtgatgtttgaaggtgagttttaaagtgatatgctagatacttttttcaa 157  Q
    ||||||||||||| |||||||  |||||||||||||| ||||||| ||||    
T  85808 gtgatgtttgaagatgagtttctaagtgatatgctaggtacttttgtcaa 85759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 159 - 316
Target Start/End: Complemental strand, 13802873 - 13802715
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcaga--taatgaacaaattctaatatggatcacttgctccata 256  Q
    |||||||||| || ||||||||||||||   ||||||||| | ||||||||||||||||||  ||| || |||||| |||||||||||||||||||||||    
T  13802873 tgactttttcggtaaagtcgtttgaatgaaccaatcagattttaagtgatgacacgtcagaagtaagga-caaattataatatggatcacttgctccata 13802775  T
Q  257 tgttccaccatagacaagtttatttcatgatcttaacagttagatttacttggcctctat 316  Q
    ||||||||||||||||  |||| || ||||||||||  |||||||||  |||| ||||||    
T  13802774 tgttccaccatagacagatttacttgatgatcttaatggttagatttgtttggtctctat 13802715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 3879660 - 3879599
Alignment:
Q  160 gactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcagata 221  Q
    ||||||||| ||||||||||||||||| | |||| |||| ||||||||||||||||||||||    
T  3879660 gactttttcggtgaagtcgtttgaatgagccaattagatttcaagtgatgacacgtcagata 3879599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 275 - 330
Target Start/End: Complemental strand, 3879543 - 3879488
Alignment:
Q  275 tttatttcatgatcttaacagttagatttacttggcctctatattattgtggtata 330  Q
    ||||||||||||||||||  ||||||||||||||| |||||| |||||||||||||    
T  3879543 tttatttcatgatcttaatggttagatttacttggtctctatgttattgtggtata 3879488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 30945633 - 30945584
Alignment:
Q  170 gtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtcaga 219  Q
    ||||||||||||||||||||||||||||| | || |||||||||||||||    
T  30945633 gtgaagtcgtttgaatgggtcaatcagattttaaatgatgacacgtcaga 30945584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 328
Target Start/End: Original strand, 23613575 - 23613678
Alignment:
Q  226 acaaattctaatatggatcacttgctccatatgttccaccatagacaa-gtttatttcatgatcttaacagttagatttacttggcctctatattattgt 324  Q
    ||||||||||||||||| ||||||||| |||||||||||||| || ||  ||| ||| | ||||||||| |||||||||  |||| ||| ||  ||||||    
T  23613575 acaaattctaatatggaccacttgctcaatatgttccaccatggataactttttttttaagatcttaacggttagatttgtttggtctccatgatattgt 23613674  T
Q  325 ggta 328  Q
    ||||    
T  23613675 ggta 23613678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 531567 - 531625
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtca 217  Q
    |||||| ||| ||||||||||||||||||| ||||||||| | || |||||||||||||    
T  531567 tgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 531625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 30900 - 30842
Alignment:
Q  159 tgactttttcagtgaagtcgtttgaatgggtcaatcagatatcaagtgatgacacgtca 217  Q
    |||||| ||| ||||||||||||||||||| ||||||||| | || |||||||||||||    
T  30900 tgacttcttcggtgaagtcgtttgaatgggccaatcagattttaaatgatgacacgtca 30842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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